DY271329

Overview
NameDY271329
Unique NameDY271329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.174e-36
Identity = 87/264 (32.95%), Postives = 159/264 (60.23%), Query Frame = 2
Query:   83 PVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIA--MPIDAND-LLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIK-KYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKIKQMADLVKEKNW 856
            P +V+++  + KR +G +   ++I A++AVA+ +RT+LGPR + KML+   G + +TNDG  I+ ++DV H  AK M+ELS++QD E+GDGTT V+VLAG +L  AE+ I++  HP  I   ++ A + A+  LD+I+   P++  + L+   ++ +G+K  ++     A++A+DA  +V       +   D+  + I +E   GG+LED+ ++KG++ +K +  P +M +++    ++ L  P    K K K   D+   +++
Sbjct:   16 PFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFPVENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSVA-----DIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHP-QMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDF 273          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.413e-36
Identity = 89/252 (35.32%), Postives = 143/252 (56.75%), Query Frame = 2
Query:   74 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND--LLGLVKSCIGTKFTSQF-GDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIATHVLSFLILPLSTKKEKI 820
            M  P+ +L +   R  G     +NI+A KAVA+ +RTTLGPR M KML+D+SG +V+TNDG  IL ++D+ HPAA+ ++E+S+TQ+EEVGDGTT+  VL GE+L  AE+ ++ + HPTVI   Y +A   A   +D + + +  +D  L  + +S +  K T     D+LA   + A   V  D        D++    V    G     + +++GV+ +K+ V    M R ++   ++ L + L  +K ++
Sbjct:    5 MQQPLYILAEGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTLDDDLLRKVAESSMTGKGTGDVTADVLAKHVVKAVQMVHEDDNGVFHRDDVR----VLTRTGASSSATELVEGVVLDKEPVNE-NMPRSVSDATVAVLDMKLDVRKSEV 251          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.413e-36
Identity = 92/258 (35.66%), Postives = 146/258 (56.59%), Query Frame = 2
Query:   71 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPI---DANDLLGLVKSCIGT----KFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D ++   L++ C  T    K  SQ  +  + + +DA   +  DL Q        K I ++KV GG LEDS+++ GV F K     G     +K  +  ++ L + L  K EK
Sbjct:    1 MMPTPVILLKEGTDTSQGIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALLNVELELKAEK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.413e-36
Identity = 93/268 (34.70%), Postives = 153/268 (57.09%), Query Frame = 2
Query:   98 KDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPID-ANDLL--GLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRR--KIATHVLSFLILPLSTKKEKIKQMADLVKEKNWGIRLKKKKEY 886
            KD  K ES   V ++NI A+KAVAD +RT+LGPR M KM+   +G + +TNDG  IL ++ V HP AK ++ELS+ QD E GDGTT+V+V+AG +L  A+  ++K  HPT I  ++  A  +A  +LD ++ P+D +ND L   +  + + +K  SQ   LLA +A++A     +   +    V++K    ++K+ G  +E+S +++G + ++  +  G   R  K    ++ F I P  T  E    + D  +       LK++++Y
Sbjct:   24 KDKDKPES---VRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLLAPMAVNAVKK--IINSENDSNVNLKMIKIIKKM-GDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDR---ALKEERQY 282          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.070e-36
Identity = 103/287 (35.89%), Postives = 149/287 (51.92%), Query Frame = 2
Query:   83 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---LLGLVKSCIGTKFTSQF----GDLLADLAIDATTTVG-VDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEKIKQMADLVKEKNWGIRLKKKKEYPQNPRLANW 913
            PV+VLK+      G     +NI A  AV D IRTTLGP    K+++D  G +V++NDG  I++ LD+ HPAAK++++++R QD EVGDGTTSV+V AGE+L  A  F+       +I R Y KA + AV  +  IA+ +D +D   L  L+  C  T   S+           + +DA  T+   DL + +        I ++KVPGG +EDS ++KGV F K     G  +  +      +  L + L  K EK           N  +R+ K +EY QN   A W
Sbjct:    9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENM--------IGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELKAEK----------DNAEVRVDKVQEY-QNIVDAEW 276          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.575e-35
Identity = 87/258 (33.72%), Postives = 148/258 (57.36%), Query Frame = 2
Query:  113 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLLGLVKSC---IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVV--APGKMRR-KIATHVLSFLILPLSTKKEK------IKQMADLVKEK 850
            +E   +V  ANI A+++VAD IRT+LGP+ M KM+  + G I+++NDG+ IL+++ + HP A+ ++E+S  QD E GDGTTSV++L G +L  AE  +NK  HPT+I  ++  A + +V +L  +   +  +D   LV++    + +K  SQ+   LA LA+D+   +     +  + VD+     V+KV GG ++D+ ++ GV+  +  +  A G  R+ K    ++ F I P     E        +QM  ++KE+
Sbjct:   14 KEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKIS---DENSKNVDLNDIRLVKKV-GGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEE 267          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.509e-35
Identity = 91/258 (35.27%), Postives = 145/258 (56.20%), Query Frame = 2
Query:   71 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLL---GLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D +    L++ C    + +K  SQ     A + +DA   +  DL Q        K I ++KV GG LE+S+++ GV F K     G     +K    +++ L + L  K EK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.583e-35
Identity = 92/258 (35.66%), Postives = 144/258 (55.81%), Query Frame = 2
Query:   71 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLL---GLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D +    L++ C    + +K  SQ     A + +DA   +  DL Q        K I ++KV GG LEDS+++ GV F K     G     +K     ++ L + L  K EK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.985e-35
Identity = 92/258 (35.66%), Postives = 144/258 (55.81%), Query Frame = 2
Query:   71 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLL---GLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D +    L++ C    + +K  SQ     A + +DA   +  DL Q        K I ++KV GG LEDS+++ GV F K     G     +K     ++ L + L  K EK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELELKAEK 250          
BLAST of DY271329 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.021e-34
Identity = 89/258 (34.50%), Postives = 143/258 (55.43%), Query Frame = 2
Query:   71 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDLL---GLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIXVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIATHVLSFLILPLSTKKEK 817
            +M +PV++LK+      G     +NI A + +A+ +RTTLGPR M K+++D  G   ++NDG  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D +    +++ C    + +K  SQ     A + +DA           L E+   K I ++KV GG LE+S+++ GV F K     G     +K     ++ L + L  K EK
Sbjct:    1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMM--------LDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEK 250          
The following BLAST results are available for this feature:
BLAST of DY271329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
TCPE_CAEEL3.174e-3632.95T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
THS3_HALVO5.413e-3635.32Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPH_CHICK5.413e-3635.66T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPD_CAEEL5.413e-3634.70T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPH_SCHPO7.070e-3635.89Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPD_YEAST1.575e-3533.72T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPH_BOVIN3.509e-3535.27T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_HUMAN4.583e-3535.66T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_PONAB5.985e-3535.66T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_MOUSE1.021e-3434.50T-complex protein 1 subunit eta OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271329 ID=DY271329; Name=DY271329; organism=Citrus clementina; type=EST; length=935bp
CGGAGTTTAGTTTTGTTGAGTTGAGTTGAGTTGATACCAGTAGTTAGGGT
TTTATCCATTACTTGATACAATCATGCATTCTCCAGTTCTCGTTCTCAAG
GATTCCTTGAAGCGTGAATCTGGAACCAAGGTTCACCATGCCAATATACA
GGCTTCCAAGGCTGTTGCCGATATCATTCGGACAACATTGGGTCCCCGGT
CCATGTTAAAGATGCTACTTGATGCTAGTGGAGGGATTGTAGTTACTAAT
GATGGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAA
GTCAATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAA
CAACATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAG
TTCATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAA
GGCTTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCG
ATGCAAATGATCTGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTC
ACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGCCACCAC
TACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGA
AGTACATTANAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGATTCTAGG
GTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGGGAAAAT
GAGAAGAAAAATTGCAACCCACGTATTATCCTTCTTGATTCTCCCCTTGA
GTACAAAAAAGGAGAAAATCAAACAAATGGCTGATTTGGTTAAGGAAAAA
AACTGGGGAATCCGGTTGAAAAAAAAAAAAGAATACCCCCAAAACCCCCG
GCTGGCGAATTGGGAATTTTAAACCAAAATTGGTA
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