DY271359

Overview
NameDY271359
Unique NameDY271359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 1.321e-63
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 2
Query:   65 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR 145          

HSP 2 Score: 43.8986 bits (102), Expect = 1.321e-63
Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 3
Query:  474 LVFTHFVKRHWYIQSTCATSGEGLQEGLDWLSNH 575
            L  T    R+WY+Q +CAT+G+GL EGL WL+++
Sbjct:  139 LGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.003e-60
Identity = 102/148 (68.92%), Postives = 125/148 (84.46%), Query Frame = 2
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 490
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSL 148          

HSP 2 Score: 40.0466 bits (92), Expect = 1.003e-60
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  495 KRHWYIQSTCATSGEGLQEGLDWLSNHI 578
            KR W IQ T A SG+GL EGL+WLS  I
Sbjct:  150 KRCWLIQGTSAISGQGLYEGLEWLSTTI 177          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.083e-56
Identity = 92/149 (61.74%), Postives = 121/149 (81.21%), Query Frame = 2
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149          

HSP 2 Score: 42.3578 bits (98), Expect = 1.083e-56
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  486 HFVK-RHWYIQSTCATSGEGLQEGLDWLSN 572
            H +K R W I  TCA  GEGL EGLDWLSN
Sbjct:  146 HKIKSRQWAIFKTCAVKGEGLFEGLDWLSN 175          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.127e-56
Identity = 91/149 (61.07%), Postives = 121/149 (81.21%), Query Frame = 2
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149          

HSP 2 Score: 42.3578 bits (98), Expect = 3.127e-56
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  486 HFVK-RHWYIQSTCATSGEGLQEGLDWLSN 572
            H +K R W I  TCA  GEGL EGLDWLSN
Sbjct:  146 HKIKSRQWAIFKTCAVKGEGLFEGLDWLSN 175          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 8.272e-55
Identity = 104/145 (71.72%), Postives = 122/145 (84.14%), Query Frame = 2
Query:   59 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +R+ EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLK 153          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.833e-53
Identity = 90/145 (62.07%), Postives = 118/145 (81.38%), Query Frame = 2
Query:   59 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIK 157          

HSP 2 Score: 33.8834 bits (76), Expect = 6.833e-53
Identity = 13/36 (36.11%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  471 SLVFTHFVKRHWYIQSTCATSGEGLQEGLDWLSNHI 578
            SL       R WY+Q   A   +G+ EG DW++N +
Sbjct:  150 SLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSL 185          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.763e-50
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 2
Query:   89 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 490
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 535          

HSP 2 Score: 38.891 bits (89), Expect = 1.763e-50
Identity = 17/27 (62.96%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  498 RHWYIQSTCATSGEGLQEGLDWLSNHI 578
            R WYIQ   A SG GL EGLDWLS  +
Sbjct:  539 RSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.763e-50
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 2
Query:   89 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 490
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 535          

HSP 2 Score: 38.891 bits (89), Expect = 1.763e-50
Identity = 17/27 (62.96%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  498 RHWYIQSTCATSGEGLQEGLDWLSNHI 578
            R WYIQ   A SG GL EGLDWLS  +
Sbjct:  539 RSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.037e-50
Identity = 87/145 (60.00%), Postives = 117/145 (80.69%), Query Frame = 2
Query:   59 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            F+ +FS    KK+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L ++EL+   +L+FANKQD+ NAMN +EI D L L+S++
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIK 157          

HSP 2 Score: 29.6462 bits (65), Expect = 3.037e-50
Identity = 14/37 (37.84%), Postives = 19/37 (51.35%), Query Frame = 3
Query:  471 SLVFTHFVKRHWYIQSTCAT-SGEGLQEGLDWLSNHI 578
            SL       R WY+Q   A  S  G+ EG DW++N +
Sbjct:  150 SLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSL 186          
BLAST of DY271359 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.039e-50
Identity = 91/149 (61.07%), Postives = 118/149 (79.19%), Query Frame = 2
Query:   47 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 493
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM ++E+ + LGL +L+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK 149          

HSP 2 Score: 30.4166 bits (67), Expect = 3.039e-50
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  498 RHWYIQSTCATSGEGLQEGLDWL 566
            R W I  T AT G GL E ++WL
Sbjct:  151 RKWQIFKTSATKGTGLDEAMEWL 173          
The following BLAST results are available for this feature:
BLAST of DY271359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF6_CHICK1.321e-6372.73ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF4_ARATH1.003e-6068.92Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_ARATH1.083e-5661.74ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP3.127e-5661.07ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF2_SCHPO8.272e-5571.72Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARFJ_DICDI6.833e-5362.07ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARD1_MOUSE1.763e-5062.69GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.763e-5062.69GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFH_DICDI3.037e-5060.00ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL1_HUMAN3.039e-5061.07ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YL10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271359 ID=DY271359; Name=DY271359; organism=Citrus clementina; type=EST; length=1066bp
TTCCCTTAAGTTGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGG
GGCTGTCATTTACGAAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATG
CGAATTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTA
CAAGCTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCA
ACGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTT
GGGGGTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACAC
TCAAGGGCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTG
AAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGAT
GCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAA
TGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAAACGC
CACTGGTACATCCAGAGCACATGTGCCACATCTGGGGAAGGACTCCAGGA
GGGTCTGGACTGGCTCTCCAACCACATCGCCTACAGGGCTTAGGTGATTG
GTCCAGTCTGAACCACTCCCTTTGCGGCAGCCTCCAAGTGAATGAAGTTA
CTATGCTTTTGTTTTATTTTGCCGGGGATTCTTTTTGGGGCTTTCCCACC
TCCGTTCAGTGAAATGGAATTTGTTTGCGGTGGGTTTTTGAATGGTACCA
ATACATATAGGTTTTCCGCCTTGGCAACTGGAAGTTTCAACTTCCCCCGA
TAACTCGAACTTACGGGTTTTTTTGGGCGGGTGATAAAAAACAGAAAAGG
AAAACCGACAGCCACACACACACCAACACGCCTCACCAAACATCGCCCCT
CTTCCCCGCTCCCGCTCGTCTCGACATAAAAGCATCCTCTAATCTCTCTC
CTCGTACAAACATCCAAAGCTCCAGTAGACATCACTCCTTGCACCCCCGC
TACATATGTATTTCCTTCGAAGGTACTATCATGGCACACACATCTCCCAA
CTCTACTAACACAACA
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