DY271370

Overview
NameDY271370
Unique NameDY271370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 58/157 (36.94%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  128 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  +  G   +AF++ ++    L
Sbjct:    6 KIFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECL 158          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 58/157 (36.94%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  128 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  +  G   +AF++ ++    L
Sbjct:    6 KIFGKWDPTEVEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECL 158          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.631e-26
Identity = 70/160 (43.75%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  131 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKT 583
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AFR  K+
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKS 163          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.354e-26
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 2
Query:   83 VVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIK 580
            V AQ +  + P     LFN+W   +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+ ++ K
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKK 167          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.605e-26
Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  +  G   +AF++ ++    L
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAFKSKRSVAECL 154          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.605e-26
Identity = 64/167 (38.32%), Postives = 99/167 (59.28%), Query Frame = 2
Query:   89 AQSQDPSQPH-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRN 574
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+ A+  +  G   ++F++
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKS 164          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  113 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  ++   L
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEAL 184          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.650e-25
Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  128 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFR 571
            +LF  W   +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+
Sbjct:   22 QLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFK 163          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.131e-25
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 2
Query:  113 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   ++   L
Sbjct:   15 PH-EIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEAL 187          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 68/178 (38.20%), Postives = 97/178 (54.49%), Query Frame = 2
Query:  113 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   ++   L
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEAL 184          
The following BLAST results are available for this feature:
BLAST of DY271370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METMA2.528e-2636.9430S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METAC3.301e-2636.9430S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_CENSY5.631e-2643.7530S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_METB67.354e-2638.5530S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_METBF9.605e-2636.7130S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_HALMO9.605e-2638.3230S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_PYRFU2.140e-2538.7630S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_NATPD3.650e-2540.5430S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_PYRHO8.131e-2538.7630S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_PYRAB1.062e-2438.2030S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YM01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271370 ID=DY271370; Name=DY271370; organism=Citrus clementina; type=EST; length=842bp
CGAGCGGCAGCTTATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAAC
CCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCCAGCGATCTATCTACTCCCCACTGGT
GCTCGTGAATCGGCTTTTCGTAACATCAAGACTTATTGCCGAATGCTTGG
CCGATGAACTCCTTTAATGCCGCCAAGGGTTTCCTCTAACAGCTTATGCG
ATCAAGAAAAAGGATGAAAATTGAAGAAATGCGCAAGGCCACATCCCTGA
GGACGTGATAGTGGAAAAACCCAATGCGAAAGTTTGACTTTTCAAAAAAA
ACAAAAACTTTTGGACAAAGTTTTTGTTGGCCTTTTTCACAAATGTGGGT
CCCATTTTTGAATACAAAGAACTTGAGGGAGGCATTCACCGC
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