DY271395

Overview
NameDY271395
Unique NameDY271395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length999
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.464e-13
Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  280 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG--VPCSTKPMRI 798
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   P +T+P+ +
Sbjct:   62 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.464e-13
Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  280 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG--VPCSTKPMRI 798
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   P +T+P+ +
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.464e-13
Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  280 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG--VPCSTKPMRI 798
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   P +T+P+ +
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.464e-13
Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  280 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG--VPCSTKPMRI 798
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   P +T+P+ +
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.218e-13
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCSTK 786
            SL+ GDL P + E+++  +F H    VS +V R+ Q   S GY +I F +   A R ++  N T  P  ++  R+  +      R    G    IF+ +L A + +  L ETF + + ++   KV  D  TGRSKGYGFV+F  E     ++ ++NG+  + K
Sbjct:   50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 50/174 (28.74%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  277 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCSTKPMRI 798
            A+  G  SL++GDL   + +S +   FG  G  V+ +V R+  T  S GYG++ F +   A R +Q  N   +P   +  R+ ++      RR   G    IF+ +L   +    L +TF + + ++   KV  D ++G+SKGYGFV++ +E     ++ ++NG+  + K + +
Sbjct:   30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 49/176 (27.84%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  277 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCS--TKPMRI 798
            A+ D   +L +  L   M +    S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   S  T+P+ +
Sbjct:   33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 49/176 (27.84%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  277 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCS--TKPMRI 798
            A+ D   +L +  L   M +    S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   S  T+P+ +
Sbjct:   45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 45/159 (28.30%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  328 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG--VPCSTKPMRI 798
            M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   P +T+P+ +
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.169e-13
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  271 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGV 771
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +     ++ +MNG+
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGM 161          
The following BLAST results are available for this feature:
BLAST of DY271395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ELAV2_XENTR2.464e-1327.43ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_PONAB2.464e-1327.43ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE2.464e-1327.43ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN2.464e-1327.43ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP3_ARATH3.218e-1332.52Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP2_ARATH5.489e-1328.74Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ELAV4_RAT5.489e-1327.84ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE5.489e-1327.84ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV2_RAT5.489e-1328.30ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
PABPB_XENLA7.169e-1331.74Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YN10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271395 ID=DY271395; Name=DY271395; organism=Citrus clementina; type=EST; length=999bp
TCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAATCAATTAA
TAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCCATCACAGC
CTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCG
TATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACTCCGGTGCC
ACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGA
CGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCT
TTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAG
CATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACA
AGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCAT
GCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAG
CACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGA
GGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCT
GCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCTGTCTACTC
GTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGGACGCTCTA
AGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAATTGCTTTCC
ATGACCGAAATGAATGGGGTGCCCTGCTCTACTAAACCTATGCGGATTGG
GCCACCTGCCACCAAGAAAGCTGCCCCTGGCCCGCAATATCCAAAAAGCT
ACTTTACCAAATTACCCCAGGGAAGCCCGGGGCGAAGAAGGATCCAAAAA
ATACAAAAAATTTTTGGTGGGGGGTTGGAACCCTATGGTTAACAATGAAC
ATTTTGAAAAACGTTTTTTGGGCAAATAGGGGGAATTAGTTTCCTGGGA
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