DY271402

Overview
NameDY271402
Unique NameDY271402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1095
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.448e-35
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 3
Query:  150 TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPY-CPCS 473
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYC++ + +    YC P   PC+
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCA 183          

HSP 2 Score: 35.8094 bits (81), Expect = 1.448e-35
Identity = 26/68 (38.24%), Postives = 36/68 (52.94%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVL 675
            PG+ YYGRGP QLT N NY   G+ ++ DL   + P    T+     K +  F    +A+KP  H V+
Sbjct:  184 PGKKYYGRGPIQLTHNYNYGLAGQAIKEDLI--NNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVI 249          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 132.494 bits (332), Expect = 3.201e-35
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   90 GSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+YC P    PC+
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCA 181          

HSP 2 Score: 38.1206 bits (87), Expect = 3.201e-35
Identity = 29/74 (39.19%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ YYGRGP QL+ N NY   G+ + VDL +   P    T      K +  F   A+A KP  H V+  Q  P
Sbjct:  182 PGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLR--NPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSP 253          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.095e-35
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 3
Query:  147 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    SDYC P    PC+
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCA 129          

HSP 2 Score: 35.4242 bits (80), Expect = 7.095e-35
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ YYGRGP QL+ N NY   G+ + VDL   + P    T      K +  F   A+  KP  H V+  Q  P
Sbjct:  130 PGKRYYGRGPIQLSHNYNYGPAGRAIGVDLL--ANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSP 201          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.042e-34
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  147 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++    +DYC P    PC+
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCA 129          

HSP 2 Score: 36.5798 bits (83), Expect = 2.042e-34
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ YYGRGP QL+ N NY   G+ + VDL +   P    T      K +  F   A+A KP  H V+  +  P
Sbjct:  130 PGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLR--NPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSP 201          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.451e-34
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  108 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            G G   G    G G  GG +  ++S+E+FE LL +RND  C ARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++   + YC P    PC+
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCA 190          

HSP 2 Score: 31.9574 bits (71), Expect = 3.451e-34
Identity = 22/71 (30.99%), Postives = 35/71 (49.30%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            +Y+GRGP QL++N NY   G+ +  DL   + P    +  +   K +  F    ++ KP  H V+  Q  P
Sbjct:  194 KYFGRGPIQLSYNYNYGPAGEAIGEDLL--NNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTP 262          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.367e-32
Identity = 64/143 (44.76%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   87 GGSAQNCGSGAV------CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS--DYC--YPYCPCSLAR 482
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYC+ ++ ++G+   YC   P  PC+  +
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPCAAGK 184          

HSP 2 Score: 33.8834 bits (76), Expect = 2.367e-32
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDL 564
            +YYGRGP Q+T+N NY   G+ +  DL
Sbjct:  185 KYYGRGPIQITYNYNYGPAGQAIGSDL 211          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.510e-32
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 3
Query:  171 KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYC--YPYCPCSLARA--------ILWPRSKSTHLELQLLKVRKNPGGGLIQTIQTFLALNQLYQSS*AIWIWKT 638
            KIISR MF+ +L +RN+  C A+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYC++++ +  S+YC   P  PC+  ++        + W  +     E   + +  NP           +A +++     A+W W T
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNP---------DLVATDRVLSFKTALWFWMT 160          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.807e-32
Identity = 64/132 (48.48%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   87 GGSAQNCGSGAV------CGERDTGHGTDGGELG--KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSH--GSDYC 452
            G ++  CGSG        CG       + GG  G   I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +   GSDYC
Sbjct:   45 GSTSAYCGSGCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYC 176          

HSP 2 Score: 30.4166 bits (67), Expect = 6.807e-32
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDL 564
            +YYGRGP Q+++N NY   G+ +  +L
Sbjct:  189 KYYGRGPIQISYNYNYGPAGQAIGSNL 215          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.334e-31
Identity = 76/200 (38.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHG--------TDG---GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCY--PYCPCSLARAILWPRSKSTHLELQLLKVRKNPGGGLIQTIQTFLALNQLYQSS*AIWIWKTCKS 647
            G +   CG G    +  +G G        T G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+  +   YC      PC+  +                    +  G  L+      +A N +     AIW W T +S
Sbjct:   48 GNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNN-PDLVATNAVVSFKSAIWFWMTAQS 246          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.337e-31
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  165 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYC 452
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+     DYC
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYC 100          

HSP 2 Score: 31.5722 bits (70), Expect = 3.337e-31
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDL 564
            PG+ Y+GRGP Q+++N NY   G  + V+L
Sbjct:  110 PGKKYFGRGPIQISYNYNYGAAGSAIGVNL 139          
The following BLAST results are available for this feature:
BLAST of DY271402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIX_PEA1.448e-3552.29Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_HORVU3.201e-3547.1426 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU7.095e-3554.0526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE2.042e-3453.15Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI9_ORYSJ3.451e-3450.00Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ2.367e-3244.76Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_CARPA3.510e-3241.57Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_ORYSJ6.807e-3248.48Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC1.334e-3138.00Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHID_SOLLC3.337e-3156.25Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271402 ID=DY271402; Name=DY271402; organism=Citrus clementina; type=EST; length=1095bp
GGATAATTGATATTATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCC
TTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACA
GAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACT
GTTATCCTTACTGTCCATGTTCCCTTGCCAGGGCAATACTATGGCCGAGG
TCCAAATCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAAAAACCC
TGGAGGTGGACTTATTCAAACAATCCAAACCTTCTTGGCACTGAACCAGT
TATATCAATCAAGTTAAGCCATCTGGATTTGGAAGACCTGCAAAAGCACA
CAAGCCCTTCTGGCACCAAGTCCTTTACCCACAAAGGGAACCCCTCACCC
CATAGATTTATATGGAAACCAGGCCCAGAGGACCCCGATCCGACCATATA
GTAGAAAACCAGGAGGCAACCCAAACTCCCTAAAGATCCGCAAGACCCTC
ACTTCATCACCATATAAACACTCCCTCAACACCTTTTCAAAGCAAAAATT
CGATTTAAAGGCTTCTATACAATCCAAATGCTAAACCTCTAACACTACTA
CTACACCACTTCTACATCGCACCACTAACAAAGCACTGCAAACTCTCTAC
CTCCAAGCAATCCACAACTTAGACCTCGTCCTAGCTAAGAACACTAAAAC
TCGATCGTAACATCAAACACAATACTCTTCAAACGAACAAAACAATAAGA
GGACCTCTGTCCATCTCGACCGGTATGCTCTACAGACGCACGTGC
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