DY271406

Overview
NameDY271406
Unique NameDY271406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 40/132 (30.30%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  123 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 518
            KK  +++ +GLD AGKTT+L  LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+
Sbjct:   23 KKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLY 154          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.993e-17
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  126 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 518
            KE+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  126 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRH-WYTQSTCATSGEGLYE 584
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  +   ++ A +G G  E
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.415e-16
Identity = 51/141 (36.17%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   87 LTFTK-LFSRLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDL 470
            ++F K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  123 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 515
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.329e-12
Identity = 57/190 (30.00%), Postives = 85/190 (44.74%), Query Frame = 3
Query:   93 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTRPEAVKIFLRTGNSG 662
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL         T +      + + W +Q T   + E    G            + VKIF  T  SG
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDLEGH------TPETAEADYQWKSWLSQETGIENQEDPERG------------QVVKIFYVTITSG 192          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  123 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 416
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARL16_HUMAN (ADP-ribosylation factor-like protein 16 OS=Homo sapiens GN=ARL16 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  141 LMVGLDAAGKTTILYKLK----------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RQRHWYTQSTCATSGEGLYEGLDWLLKT 608
            L++G    GKT ++ +L+          LGE   T PT+G N+  +  +    T+ ++GG   + P+W  Y+ N + L+FV+D++D  ++  +  +L  +L+ ++L +A +L+  NK DLP  M+  E+   + L  +    +++  T    A  G GL   L WL  T
Sbjct:   27 LLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPPTRPTVGTNLTDIVAQR-KITIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAREGTGLAGVLAWLQAT 192          
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARFL_DICDI (ADP-ribosylation factor L OS=Dictyostelium discoideum GN=arrL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 39/167 (23.35%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  132 MRILMVGLDAAGKTTILYKL----KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            +++ ++GL+ +GKTT+L K         I + + + G  +E++ +K       D+   + I  +++ Y   +  +IF++DS+D  ++ EA++++  ++ E  +  +V LV ANKQD    ++  ++   L L+ L    W          +G+ + + W+L+ ++ R
Sbjct:   19 IKLGIIGLENSGKTTLLNKFIDASSKKSIASVLISTGVYIESIIFKGWEIFAGDLLYPNYISKIYKPYLLGSDVIIFMIDSSDIHQMTEAKNQIDLLIQEQCINSSVFLVMANKQDQKRCVSIHQLEQYLELYRL-TNPWKCLPLSLIQEKGIEDLIKWILENTVVR 184          
The following BLAST results are available for this feature:
BLAST of DY271406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
SAR1A_MOUSE3.993e-1730.30GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
CIN4_YEAST3.993e-1735.77GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL10_MOUSE1.162e-1634.62ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
ARLX_DICDI4.415e-1636.17ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN3.737e-1535.61ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_ENCCU1.329e-1230.00Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC2.961e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
ARL16_HUMAN7.294e-1128.40ADP-ribosylation factor-like protein 16 OS=Homo sa... [more]
ARFL_DICDI9.526e-1123.35ADP-ribosylation factor L OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271406 ID=DY271406; Name=DY271406; organism=Citrus clementina; type=EST; length=889bp
ATAAGCTTCGTTCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGTT
CTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAA
GCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTG
GTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGA
GAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGA
ATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGA
TTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTT
GTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATT
GCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTAT
TTGCTAACAAACAGGATCTTCCCAATGCAATGAATGCTGCTGAAATTACT
GATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACACCCAGAG
CACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGGCTGGATTGGCTCC
TCAAAACATCCCTAACAAGGCCTGAAGCTGTTAAAATCTTTTTGCGGACT
GGCAATTCTGGATGCGGGGGTGAAAATTACTTATTTTTTTTTCTTTTTAA
CCCCTTTTTTTTGGAAACTTTTGGGTTGTGGGGTTGTTTGGGCCCAGGAA
TTTTTCAAATAATTTTGTAAAAAAAAATTGGTGGGTTGGAACTTGGCCCC
CAAGGGTTTGGGCTCGATTTAAATTCCGGAAATAGAAACAAATTGGGGGC
CCCCCCCATTTTTGAAATTTTTTTTTTCCTTTTCGTTTT
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