DY271406

Overview
NameDY271406
Unique NameDY271406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.140e-80
Identity = 147/173 (84.97%), Postives = 156/173 (90.17%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EA +EL +ML EDELRDAVLLVFANKQDLPNAM  +E+TDKL L +LR R WY Q+TCAT G GLYEGLDWL
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.489e-80
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY Q+TCAT G GLY+GLDWL
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.489e-80
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY Q+TCAT G GLY+GLDWL
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.489e-80
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY Q+TCAT G GLY+GLDWL
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 5.660e-80
Identity = 142/173 (82.08%), Postives = 157/173 (90.75%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ +EL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY Q+TCAT G GLY+GLDWL
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 9.654e-80
Identity = 145/173 (83.82%), Postives = 155/173 (89.60%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY Q+TCAT G GLYEGLDWL
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 9.654e-80
Identity = 145/173 (83.82%), Postives = 155/173 (89.60%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY Q+TCAT G GLYEGLDWL
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 4.791e-79
Identity = 145/173 (83.82%), Postives = 154/173 (89.02%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY Q+TCAT G GLYEGLDWL
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 4.791e-79
Identity = 145/173 (83.82%), Postives = 154/173 (89.02%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY Q+TCAT G GLYEGLDWL
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 1.067e-78
Identity = 135/173 (78.03%), Postives = 163/173 (94.22%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI +AR+ELHRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+ QSTCAT G+GLYEG DWL
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWL 173
The following BLAST results are available for this feature:
BLAST of DY271406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF4_XENLA1.140e-8084.97ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_RAT1.489e-8083.24ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.489e-8083.24ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.489e-8083.24ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF5_CHICK5.660e-8082.08ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_PONAB9.654e-8083.82ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN9.654e-8083.82ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF4_RAT4.791e-7983.82ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE4.791e-7983.82ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF1_PLAFA1.067e-7878.03ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271406 ID=DY271406; Name=DY271406; organism=Citrus clementina; type=EST; length=889bp
ATAAGCTTCGTTCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGTT
CTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAA
GCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTG
GTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGA
GAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGA
ATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGA
TTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTT
GTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATT
GCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTAT
TTGCTAACAAACAGGATCTTCCCAATGCAATGAATGCTGCTGAAATTACT
GATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACACCCAGAG
CACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGGCTGGATTGGCTCC
TCAAAACATCCCTAACAAGGCCTGAAGCTGTTAAAATCTTTTTGCGGACT
GGCAATTCTGGATGCGGGGGTGAAAATTACTTATTTTTTTTTCTTTTTAA
CCCCTTTTTTTTGGAAACTTTTGGGTTGTGGGGTTGTTTGGGCCCAGGAA
TTTTTCAAATAATTTTGTAAAAAAAAATTGGTGGGTTGGAACTTGGCCCC
CAAGGGTTTGGGCTCGATTTAAATTCCGGAAATAGAAACAAATTGGGGGC
CCCCCCCATTTTTGAAATTTTTTTTTTCCTTTTCGTTTT
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