DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BURM7 (Oligoribonuclease OS=Burkholderia mallei (strain NCTC 10247) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.738e-29
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W P
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQP 158          

HSP 2 Score: 28.8758 bits (63), Expect = 2.738e-29
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  642 IYRKFPSKEQKHRALNDIKESIMELKY*QE 731
            IY+ F  K   H AL DI ESI ELKY +E
Sbjct:  160 IYKGF-QKRAMHTALADIHESIDELKYYRE 188          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_CITK8 (Oligoribonuclease OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=orn PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.747e-29
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H  SGL ++V  S+  +R AE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W P  L
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSAEQLALMDDWNVRTHTGSGLVDRVKASSFDDRAAELATIEFLKEWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL 149          

HSP 2 Score: 32.3426 bits (72), Expect = 2.747e-29
Identity = 13/28 (46.43%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            +K+  H+A++DI+ES+ EL Y +EN  K
Sbjct:  153 TKQGTHQAMDDIRESVAELAYYRENFIK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHESA (Oligoribonuclease OS=Shewanella sp. (strain ANA-3) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.747e-29
Identity = 61/152 (40.13%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S + E +A  Q + F+++ V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W P  +    FK+  T
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETM--AGFKKQNT 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.747e-29
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL DI+ESI EL+Y +  +FK
Sbjct:  154 KQNTHQALQDIQESIAELQYYRSKVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHEB8 (Oligoribonuclease OS=Shewanella baltica (strain OS185) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.747e-29
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ +VDRI+EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S  TE +A  + + F+++ V      + GNS+  D  FL +YM +L   F +  VDVS+IK L   W P  +    FK+  T
Sbjct:    8 LIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRWSPETM--AGFKKQNT 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.747e-29
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL DI+ESI EL+Y +  +FK
Sbjct:  154 KQNTHQALQDIQESIAELQYYRSKVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHEB5 (Oligoribonuclease OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.747e-29
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ +VDRI+EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S  TE +A  + + F+++ V      + GNS+  D  FL +YM +L   F +  VDVS+IK L   W P  +    FK+  T
Sbjct:    8 LIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRWSPETM--AGFKKQNT 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.747e-29
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+AL DI+ESI EL+Y +  +FK
Sbjct:  154 KQNTHQALQDIQESIAELQYYRSKVFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_METCA (Oligoribonuclease OS=Methylococcus capsulatus GN=orn PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.747e-29
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL  + D I+EIA I+TDG+L    EGP L IHQ +  LD M +W +  H  SGLTE+V  S + E EAE   + FV + V      + GNS+  D  FL + MP L + F +  +DVS++K L   W P
Sbjct:    8 LIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAEGPVLAIHQPESVLDRMDDWNRKQHGESGLTERVRRSTIGEAEAEHLTLGFVSEWVPPNESPICGNSICQDRRFLARCMPRLEAYFHYRNLDVSTLKILVERWAP 146          

HSP 2 Score: 34.2686 bits (77), Expect = 2.747e-29
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  HRAL+DI+ESI EL+Y ++ + K
Sbjct:  154 KQSTHRALDDIRESIAELRYYRDTVLK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_NITEU (Oligoribonuclease OS=Nitrosomonas europaea GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.895e-29
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            L+WID+EMTGL    DRI+E+A ++TD +L    E P LV+HQ  + L+ M +W Q+ H  SGL +KV  S L+E E E +++ F++ +V   T  + GNS+  D  FL + MP L S F +  +DVS++K L   W P   Q
Sbjct:    8 LIWIDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQSTHGKSGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQDRRFLARSMPKLESYFHYRNLDVSTLKELAKRWKPEITQ 150          

HSP 2 Score: 31.5722 bits (70), Expect = 7.895e-29
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIF 740
            +K+ KH AL DI +SI ELKY ++++F
Sbjct:  153 NKQGKHEALADIYDSIEELKYYRQHLF 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_COXBU (Oligoribonuclease OS=Coxiella burnetii GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.027e-28
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPR 640
            L+W+DLEMTGL  E DRI+EIA I+T+  L    EGP   IHQ  + L +M  W  +HH ASGL E+V +S++ E EAE   + F++K V      L GNSV  D  FL +YMP L   F +  +DV+++K L   W P+
Sbjct:    8 LIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ 147          

HSP 2 Score: 29.261 bits (64), Expect = 1.027e-28
Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFKTNLKK 758
            KE +H AL DI++SI EL+Y + ++   NL K
Sbjct:  154 KESQHLALQDIRDSIEELRYYRAHLL--NLSK 183          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_SHEAM (Oligoribonuclease OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=orn PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.088e-28
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ EVDRILEIA ++TD  L    +GP + IHQ+ E L +M +W Q HH ASGL E+V  S  TE +A  Q ++F+  +V      + GNSV  D  FL KYM +L   F +  +DVS+IK L   W P  ++   FK+  T
Sbjct:    8 LIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRWDPEVMK--GFKKQGT 157          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSESM (Oligoribonuclease OS=Pseudomonas syringae pv. tomato GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.339e-28
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            K  L+WIDLEMTGL  + D I+E+A IITD +L    EGP + +HQ+ E L  M EW    H  SGLT++V  S ++  +AE Q + F+K  V   +  + GNS+  D  FL ++MP L + F +  +DVS++K L   W P    E+ FK+  T
Sbjct:    4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPICGNSICQDRRFLYRHMPALENYFHYRNLDVSTLKELAARWAP----ELKFKKGST 154          

HSP 2 Score: 28.8758 bits (63), Expect = 1.339e-28
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DI+ESI EL++ +E+  K
Sbjct:  151 KGSTHLALDDIRESIAELRFYREHFIK 177          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_BURM72.738e-2941.55Oligoribonuclease OS=Burkholderia mallei (strain N... [more]
ORN_CITK82.747e-2943.66Oligoribonuclease OS=Citrobacter koseri (strain AT... [more]
ORN_SHESA2.747e-2940.13Oligoribonuclease OS=Shewanella sp. (strain ANA-3)... [more]
ORN_SHEB82.747e-2941.45Oligoribonuclease OS=Shewanella baltica (strain OS... [more]
ORN_SHEB52.747e-2941.45Oligoribonuclease OS=Shewanella baltica (strain OS... [more]
ORN_METCA2.747e-2945.32Oligoribonuclease OS=Methylococcus capsulatus GN=o... [more]
ORN_NITEU7.895e-2941.96Oligoribonuclease OS=Nitrosomonas europaea GN=orn ... [more]
ORN_COXBU1.027e-2845.00Oligoribonuclease OS=Coxiella burnetii GN=orn PE=3... [more]
ORN_SHEAM1.088e-2846.05Oligoribonuclease OS=Shewanella amazonensis (strai... [more]
ORN_PSESM1.339e-2841.29Oligoribonuclease OS=Pseudomonas syringae pv. toma... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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