DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_AZOSB (Oligoribonuclease OS=Azoarcus sp. (strain BH72) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.954e-28
Identity = 57/139 (41.01%), Postives = 89/139 (64.03%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+W+D+EMTGL+ + DRI+EIA +ITD +L    E P + +HQ +  LD+M +W +N H  SGL ++V  S ++E EAE +++ F+++ V   T  + GNS+  D  FL +YMP   + F +  +DVS++K L   W P
Sbjct:    8 LIWLDMEMTGLEPDRDRIIEIALVITDSQLNTIAEAPVIAVHQPESVLDAMDDWNKNTHGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCGNSICQDRRFLARYMPAFEAWFHYRNLDVSTLKELAKRWRP 146          

HSP 2 Score: 29.6462 bits (65), Expect = 2.954e-28
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E+Y K   K+ KH AL DI ESI EL++ ++N  +
Sbjct:  147 EVY-KGVDKKGKHEALADIHESIGELRHYRDNFLR 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_IDILO (Oligoribonuclease OS=Idiomarina loihiensis GN=orn PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.004e-28
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            K  L+WIDLEMTGL+ + + I+E+A I+TD +L    EGP + +HQ ++ LD M +W    H  SGL E+V  S   ER+A  + +EF+++ +      + GNS+  D  FL K+MP+L + F +  +DVS++K L   W P      SFK++
Sbjct:    7 KQRLIWIDLEMTGLEPDENHIIEVATIVTDAQLNTLAEGPVIAVHQPQKHLDRMDDWNVKTHTGSGLVERVKESQHDERKAAAETIEFLRQYIDAGVSPMCGNSICQDRRFLAKHMPELEAFFHYRNLDVSTLKELAKRWNPEVAN--SFKKS 157          

HSP 2 Score: 28.1054 bits (61), Expect = 5.004e-28
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIF 740
            K   H AL DI+ESI EL++ +E+ F
Sbjct:  156 KSGAHEALADIRESIAELQHYREHFF 181          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_COLP3 (Oligoribonuclease OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=orn PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.007e-28
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEI 655
            L+W+DLEMTGL+   D ILEIA IITD +L    +GP   I QT + LD+M  WC  HH  SGLT++   S ++   A K+ + FV++ V      + GNS+  D  F+ KYMPD    F +  +DVS+IK L   W P  L+ +
Sbjct:    8 LIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCGNSIGQDRRFINKYMPDFEDHFHYRNLDVSTIKELAKRWKPEVLESV 152          

HSP 2 Score: 30.0314 bits (66), Expect = 5.007e-28
Identity = 16/27 (59.26%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H AL+DIKESI ELK  +E  FK
Sbjct:  154 KTGAHLALDDIKESIAELKVYRELFFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEMY (Oligoribonuclease OS=Pseudomonas mendocina (strain ymp) GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.486e-28
Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRTET 676
            L+WIDLEMTGL+ E D I+E+A I+TD +L    EGP + IHQ+ E L  M EW    H  SGLT++V  S +    AE Q + F+++ V      + GNS+  D  FL KYMP L + F +  +DVS++K L   W P+   + SF++T T
Sbjct:    7 LIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETLAGMDEWNTRTHGQSGLTQRVRESRIDTATAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMPALEAYFHYRYLDVSTLKILAGMWAPQ--VKDSFQKTAT 156          

HSP 2 Score: 29.6462 bits (65), Expect = 8.486e-28
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K   H+AL+DI+ESI ELK+ +++  K
Sbjct:  153 KTATHQALDDIRESIAELKHYRQHFLK 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ERWCT (Oligoribonuclease OS=Erwinia carotovora subsp. atroseptica GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.486e-28
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            L+WIDLEMTGL  + DRI+EIA ++TD  L    EGP L +HQ+   L  M +W    H ASGLT++V  S   ER AE + + F++K V      + GNS+  D  FL +YMP+L + F +  +DVS++K L   W P
Sbjct:    7 LIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRTHGASGLTDRVKVSTADERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKP 145          

HSP 2 Score: 30.0314 bits (66), Expect = 8.486e-28
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  663 KEQKHRALNDIKESIMELKY*QENIFK 743
            K+  H+A++DI+ES+ EL Y +EN  +
Sbjct:  153 KQGTHQAMDDIRESLAELVYYRENFLR 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PSEA6 (Oligoribonuclease OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=orn PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.207e-28
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFK 664
            LVWID+EMTGL  EVD +LEIA I+TD  L    EGP L IHQ+ + L++M +WC + H  SGLTE+   S + E+ A  + + F++K V      L GN++  D  F+ KYMP+L   F +  +DVS++K L   W P  L+  S K
Sbjct:    8 LVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDDVLNNMNQWCIDTHGKSGLTERSRKSTVDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELEDYFHYRNIDVSTLKELVKRWKPEVLEGFSKK 155          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_YEAST (Oligoribonuclease, mitochondrial OS=Saccharomyces cerevisiae GN=REX2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.093e-27
Identity = 72/163 (44.17%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  164 TLENQQN-SQTP-LEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL--TKSVEGP-----DLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVK-----KNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSI 610
            T++N Q+ +QTP L+ +   PLVWID EMTGL    DRI+EI CIITDG L   K+ +G      + VIH   E ++ M EWC  HH  SGLT KVL S  T  + E +++E+++     KNVG    +LAGNSV++D +F+ +  P +     + +VDVSSI
Sbjct:   34 TIQNLQSMAQTPELKTKLFKPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVG----VLAGNSVHMDRLFMVREFPKVIDHLFYRIVDVSSI 192          

HSP 2 Score: 31.9574 bits (71), Expect = 1.093e-27
Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 3
Query:  612 RLYACPGILEIYRKF--------PSKEQKHRALNDIKESIMELKY*QENIFK 743
            R+     I+E+ R+         P KE  H A +DIKESI +L++  +N  K
Sbjct:  185 RIVDVSSIMEVARRHNPALQARNPKKEAAHTAYSDIKESIAQLQWYMDNYLK 236          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBF1 (Oligoribonuclease OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=orn PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.105e-27
Identity = 61/142 (42.96%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDL 646
            L+W+DLEMTGL  E  +I+EIA I+TD +L    EGP + IHQ +E L  M  WC N H  SGL  +V  S   E  A  + + F+++ V      + GNS+  D  FL K+MP L   F +  VDVS+IK L   W P  L
Sbjct:    8 LIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDNWCTNTHTNSGLVARVQESKYDEEAAIAETIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPRLEEYFHYRYVDVSTIKELARRWKPEVL 149          

HSP 2 Score: 32.3426 bits (72), Expect = 1.105e-27
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIF 740
            +K   H AL+DI+ESI ELKY +++IF
Sbjct:  153 TKAGTHLALDDIRESIAELKYYRQHIF 179          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_RUTMC (Oligoribonuclease OS=Ruthia magnifica subsp. Calyptogena magnifica GN=orn PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.203e-27
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            K  L+WIDLEMTGL  E D I+EIA I+T+ +L    +GP LVIHQ  E L +M +W   HH +SGL  +V  S+L+ ++AE Q +EF+KK V T    + GN++  D  FL  YMP L   F +  +DVS++K L + W P
Sbjct:    4 KTNLIWIDLEMTGLIPEKDVIIEIATIVTNVQLHIIAQGPSLVIHQNDEILSNMDQWNTEHHTSSGLLRRVRESSLSCKQAEAQTLEFLKKYVHTGASPMCGNTICQDRRFLYNYMPTLERFFHYRHIDVSTLKELVIRWKP 145          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PHOPR (Oligoribonuclease OS=Photobacterium profundum GN=orn PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.203e-27
Identity = 64/148 (43.24%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFK 664
            L+W+DLEMTGL  E+ +I+EIA I+TD +L    EGP L IHQ++  L  M +WC N H  SGL E++  S  TE +A +Q + F+++ V      + GNS+  D  FL K+MP+L   F +  +DVS+IK L   W P  L+  S K
Sbjct:    8 LIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNTHTNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPELEQYFHYRYLDVSTIKELTRRWQPELLEGFSKK 155          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_AZOSB2.954e-2841.01Oligoribonuclease OS=Azoarcus sp. (strain BH72) GN... [more]
ORN_IDILO5.004e-2839.22Oligoribonuclease OS=Idiomarina loihiensis GN=orn ... [more]
ORN_COLP35.007e-2842.76Oligoribonuclease OS=Colwellia psychrerythraea (st... [more]
ORN_PSEMY8.486e-2842.76Oligoribonuclease OS=Pseudomonas mendocina (strain... [more]
ORN_ERWCT8.486e-2843.88Oligoribonuclease OS=Erwinia carotovora subsp. atr... [more]
ORN_PSEA69.207e-2843.92Oligoribonuclease OS=Pseudoalteromonas atlantica (... [more]
ORN_YEAST1.093e-2744.17Oligoribonuclease, mitochondrial OS=Saccharomyces ... [more]
ORN_VIBF11.105e-2742.96Oligoribonuclease OS=Vibrio fischeri (strain ATCC ... [more]
ORN_RUTMC1.203e-2745.77Oligoribonuclease OS=Ruthia magnifica subsp. Calyp... [more]
ORN_PHOPR1.203e-2743.24Oligoribonuclease OS=Photobacterium profundum GN=o... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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