DY271419

Overview
NameDY271419
Unique NameDY271419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 4.504e-59
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            DGVFVNGKFCKDP++   +DFFFS L +PGNT N +G + T  NV  + GLNTLGIS  RIDYAP GQ PPH HPRA+EIL+V +GTL VGF++S+Q  N L +K LN GD FVFP GLIHFQFN+G T AVA +AL+SQ  G ITIA+ +FG+ P ++P+ LA+AFQ+D   V++LQ +F
Sbjct:   42 DGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQARF 222          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.310e-58
Identity = 112/179 (62.57%), Postives = 132/179 (73.74%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            VFVNGKFCKDPKL    DFF+SGL  PGNT+NRLG   TD +V +IPGLNTLGI+  R+D+AP GQ PPHIHPRAS+I+LVL+G L VGFV+S+  N TL SK+L  GD F FPIGL+ F  N GKT+AVA   + SQ PG I I DAVFG+NP I+P  LAKAF LD   V+ +Q  F
Sbjct:   43 VFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAFALDVNIVRHVQRVF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.310e-58
Identity = 119/181 (65.75%), Postives = 136/181 (75.14%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +GVFVNGKFCKDPKL   +DFFFSGL       + +G   T  NV  + GLNTLGIS  RIDYA  GQ PPH HPRA+EIL+V +GTL VGFVTS+  +N L SKVLN+GD FVFP GLIHFQ NIGK  AVA++AL+SQ PG ITIA+ VFGANP INP  LAKAFQL+P+ V DLQ KF
Sbjct:   42 NGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNP-DNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVVMDLQTKF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.228e-57
Identity = 117/181 (64.64%), Postives = 134/181 (74.03%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +GVFVNGKFCKDPKL   +DFFF GL       + +G   T  NV  + GLNTLGIS  RIDYA  GQ PPH HPRA+EIL+V  GTL VGFVTS+  +N L +KVLN+GD FVFP GLIHFQ NIGK  AVA++AL+SQ PG ITIA  VFGANP INP+ LAKAFQ+DP+ V DLQ KF
Sbjct:   42 NGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNP-DNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVVMDLQTKF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.661e-56
Identity = 113/182 (62.09%), Postives = 134/182 (73.63%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            + +FVNGKFCKDPKL   +DF+FSGL K   T ++ +G + T  NV QIPGLNTLGIS  RIDY   GQ PPH HPRA+EILLV EGTL VGF +S    N L +K LNKGD FVFP GLIHFQ NIGK  AVA+++L+SQ PG I I + +FG+ PPI+P+ LAKAFQLDPK +  LQ KF
Sbjct:   42 NALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFP-ENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKKF 222          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.087e-56
Identity = 113/179 (63.13%), Postives = 132/179 (73.74%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  CKDP     EDFFFSGL   GNT+NR G   T  NV QI GLNTLGIS  R+DYAPYG  PPHIHPRA+EIL +LEG+L+VGFVTS+   N L +KVLNKGD FVFP GLIHFQFN G  + +A +AL+SQ PG ITIA+AVFG+ P I+ D LAKAFQ++ K V  +Q +F
Sbjct:   39 VLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNP-ENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQF 216          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.148e-54
Identity = 111/181 (61.33%), Postives = 130/181 (71.82%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +GVFVNG+FCKDPKL   +DFF SGL  PGNT  RLG     AN   IPGLNTLG+   RID+AP G  PPHIHPRASEI+LV++G L VGFV+S+  N TL SK+L  GD FV PIGL+ F  NIGKTNAVA  A+ SQ PG I++ DAVFG+ PPI+P  LAKAF LD   V+ L+  F
Sbjct:   41 NGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKVF 218          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.557e-54
Identity = 109/179 (60.89%), Postives = 129/179 (72.07%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            VFVNGKFCKDPK     DF +SGL    NT N LG + T  +V +IPGLNTLG+S  R+D+A  GQ PPHIHPRA+EIL+V +G L VGFV+S+Q NN L  KVL +GD FVFPIGLIHFQ N+ +T AVA++   SQ PG I IADAVFG+NP I  + LAKAFQLD K V+ L   F
Sbjct:   44 VFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.718e-54
Identity = 110/179 (61.45%), Postives = 129/179 (72.07%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  CKD +    EDFFFSGL   GNT N+ G   T  NV Q+PGLNTLGIS  RIDYA +G  PPH HPRA+EIL VLEG+L+VGFVTS+   N L +KV+NKGD FVFP GL+HFQFN G T+AVA  AL+SQ PG IT+A+AVFG+ P I  D LAKAFQ++   V  +Q KF
Sbjct:   46 VRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNP-ENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQAKF 223          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.126e-52
Identity = 107/179 (59.78%), Postives = 127/179 (70.95%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  CKD K     DFFFSGL   GNT N+ G + T  NV QIPGLNT+G+S  RIDYAP G  PPH HPRA+EI  VLEG+L+VGFV S+   N L +KVLNKGD FVFP GL+HFQFN G  NAVA +AL+SQ PG IT+ +AVFG+ P I+ D LAKAFQ+D   +  +Q +F
Sbjct:   46 VRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNP-ENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQAQF 223          
The following BLAST results are available for this feature:
BLAST of DY271419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL18_ARATH4.504e-5960.77Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL12_ARATH1.310e-5862.57Putative germin-like protein subfamily 1 member 2 ... [more]
GL111_ARATH1.310e-5865.75Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL110_ARATH3.228e-5764.64Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL112_ARATH4.661e-5662.09Putative germin-like protein subfamily 1 member 12... [more]
GL21_ORYSJ6.087e-5663.13Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL13_ARATH1.148e-5461.33Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL16_ARATH2.557e-5460.89Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL23_ORYSJ9.718e-5461.45Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL22_ORYSJ3.126e-5259.78Putative germin-like protein 2-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271419 ID=DY271419; Name=DY271419; organism=Citrus clementina; type=EST; length=930bp
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
AACCAGAAGATTTCTTCTTCTCAGGGCTTGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATG
GCCAAAGGCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTC
CTGGAAGGAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAA
TTGGTTTGATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCC
TATTCTGCTCTCAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGC
GGTCTTTGGAGCCAATCCTCCAATAAATCCCGATTTTCTTGCCAAGGCAT
TCCAGTTGGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTAAT
GGCCATTAGGAGAAGGAATTAATGAGCCTTAATATAAATGGCCCTCTTTA
CTAGTGGCTTTACTGGATTTAGCTCCAGATTATCATATCTTAATTAAATG
TAAAAAAACAACTCTCCTCTAGAAAAAACAAACAAAAAAAAAAAAACCCC
CGCTTTCTGGAACAAAGTTGGGCAATAAAAAAAAGCCTTTGCCTAACAAT
TTTGCTGCCCCACAGTAGGCCCCAACAGCCACAATAAAACATCTCCTCAC
ACCCACCCGGCACACCCTACTAACACATTGCCAAACAGGAACAACACCTG
CTCACCTTCCCCCACCCCAGGCACATAACCCAAACATTCCACAAGTAACT
ACCGACCCCCCACTCCCACCCCACCACCAC
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