DY271419

Overview
NameDY271419
Unique NameDY271419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.965e-52
Identity = 111/180 (61.67%), Postives = 129/180 (71.67%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C DPK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EIL VLEGTLHVGFVTS+  NNTL SKVLNKGD FVFP+GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+ + LAKAFQ+   T+  LQ +F
Sbjct:   40 VLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNP-NNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQAQF 218          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.552e-51
Identity = 105/181 (58.01%), Postives = 125/181 (69.06%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +GV+VNGKFCKDPK     DF+ SGL  PGNT+   GV  T  +V+++PGLNTLG+   RID+AP G  PPH HPR SEI LV++G L VGFV+S++ N TL +KVL  GD FVFP GLI F  NIGKTNAV  +A  SQ PG I I +AVFG+ P I+P  LAKAF LD   VK  Q  F
Sbjct:   41 NGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAVF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.026e-51
Identity = 105/181 (58.01%), Postives = 124/181 (68.51%), Query Frame = 2
Query:    2 DGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +GV+VNG+FCKDPK     DF+ SGL  PGNT    G   T  +VE++PGLNTLG+   R D+AP G  PPH HPR S+I LV++G L VGFV+S++ N TL +KVL  GD FVFP GLIHF  NIG+TNAV  SA  SQ PG I I DAVFG+ P I+P  LAKAF LD   VK LQ  F
Sbjct:   41 NGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAVF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.647e-51
Identity = 110/180 (61.11%), Postives = 129/180 (71.67%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C DPK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EIL VLEGTL+VGFVTS+  NNTL SKVLNKGD FVFP GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+ D LAKAFQ++  T+  LQ +F
Sbjct:   41 VLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQF 219          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.700e-51
Identity = 109/180 (60.56%), Postives = 129/180 (71.67%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C DPK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EIL VLEGTL+VGFVTS+  NNTL SKVL KGD FVFP+GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+ + LAKAFQ++  T+  LQ +F
Sbjct:   41 VLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQF 219          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.006e-50
Identity = 110/181 (60.77%), Postives = 133/181 (73.48%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  CK+P  A  +DFF +  L KP +T N++G + T  NV Q+PGLNTLGIS  R+D+AP G  PPH HPRA+EI  VLEGTL+VGFVTS+  +N L+SKVLNKGD FVFP GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+NPPI+ D L KAFQ+D K +  LQ +F
Sbjct:   42 VRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.926e-50
Identity = 109/180 (60.56%), Postives = 128/180 (71.11%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C DPK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EIL VLEGTL+VGFVTS+  NNTL SKVLNKGD FVFP GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+   LAKAFQ++  T+  LQ +F
Sbjct:   40 VLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQF 218          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.822e-50
Identity = 109/180 (60.56%), Postives = 128/180 (71.11%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C DPK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EIL VLEGTL+VGFVTS+  NNTL SKVLNKGD FVFP GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+   LAKAFQ++  T+  LQ +F
Sbjct:   40 VLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQF 218          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.112e-49
Identity = 108/182 (59.34%), Postives = 123/182 (67.58%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFF-SGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQL--NNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            VFVNG  CK+PK     DFF    LG PGNT N  G   T   V ++PGLNTLGIS  RID+AP GQ PPH HPRA+EIL VL+GTL VGFVTS+Q    N   +K+L  GD FVFP GLIHFQ N G   AVA +AL+SQ PG ITIA+AVFG+ PPI  D LAKAF +D   V  +Q KF
Sbjct:   45 VFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKF 226          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.452e-49
Identity = 107/180 (59.44%), Postives = 128/180 (71.11%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTN-AVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V VNG  C +PK    + FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EIL VLEGTL+VGFVTS+  +N   SKVLNKGD FVFP+GLIHFQFN      AVA +AL+SQ PG ITIA+AVFG+ PPI+ D LAKAFQ++  T+  LQ +F
Sbjct:   40 VLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNP-DNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQAQF 218          
The following BLAST results are available for this feature:
BLAST of DY271419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL89_ORYSJ6.965e-5261.67Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL15_ARATH1.552e-5158.01Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL14_ARATH2.026e-5158.01Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL87_ORYSJ2.647e-5161.11Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ7.700e-5160.56Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL82_ORYSJ1.006e-5060.77Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ2.926e-5060.56Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ3.822e-5060.56Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL41_ORYSJ1.112e-4959.34Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL811_ORYSJ1.452e-4959.44Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271419 ID=DY271419; Name=DY271419; organism=Citrus clementina; type=EST; length=930bp
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
AACCAGAAGATTTCTTCTTCTCAGGGCTTGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATG
GCCAAAGGCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTC
CTGGAAGGAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAA
TTGGTTTGATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCC
TATTCTGCTCTCAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGC
GGTCTTTGGAGCCAATCCTCCAATAAATCCCGATTTTCTTGCCAAGGCAT
TCCAGTTGGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTAAT
GGCCATTAGGAGAAGGAATTAATGAGCCTTAATATAAATGGCCCTCTTTA
CTAGTGGCTTTACTGGATTTAGCTCCAGATTATCATATCTTAATTAAATG
TAAAAAAACAACTCTCCTCTAGAAAAAACAAACAAAAAAAAAAAAACCCC
CGCTTTCTGGAACAAAGTTGGGCAATAAAAAAAAGCCTTTGCCTAACAAT
TTTGCTGCCCCACAGTAGGCCCCAACAGCCACAATAAAACATCTCCTCAC
ACCCACCCGGCACACCCTACTAACACATTGCCAAACAGGAACAACACCTG
CTCACCTTCCCCCACCCCAGGCACATAACCCAAACATTCCACAAGTAACT
ACCGACCCCCCACTCCCACCCCACCACCAC
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