DY271419

Overview
NameDY271419
Unique NameDY271419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.841e-36
Identity = 81/184 (44.02%), Postives = 111/184 (60.33%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFINGH 556
            V VNG  CK    A  E  F S +   G+  AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +    N   SKV+  G+ FV P GL+HFQFN+GKT A    + NSQ PG + +   +FG+NPPI    L KA ++D   V+ L+ KF  G+
Sbjct:   44 VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGGY 227          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.141e-36
Identity = 81/182 (44.51%), Postives = 111/182 (60.99%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFING 553
            V VNG  CK    A  +  F S L K GNT+   G   T+ +V + PG NTLG+S  R+D+AP G  PPH+HPRA+EI +V++G L VG + S    N L S+V+  G+ F+ P GL+HFQFN+GKT A    + NSQ PG + +   +FG+NPPI    L KA +++   V+ L+ KF  G
Sbjct:   42 VSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAAG 223          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.102e-36
Identity = 78/172 (45.35%), Postives = 105/172 (61.05%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            CK       +DFFF+GL    +T NR G + T AN E  PGLNTLG+S  R+D AP G  P H HPRA+E++ V+ G +  GFV++        SKVL +G+ FV P G+IHFQ+N+G   A   +A NSQ PG +     +FG++P I    LAK+FQ+D K +K L+ KF
Sbjct:   57 CKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVST---AGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.473e-35
Identity = 82/184 (44.57%), Postives = 109/184 (59.24%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFINGH 556
            V +NG  CK    A  E  F S L   G+  AN  G + T  +V   PG+NTLG+S  RID+AP G  PPH+HPRA+E+ +VL G L VG + S    N   S+V+  G+ FV P GL+HFQFN+GKT A    + NSQ PG + +   +FG+NPPI    L KA ++D   V+ L+ KF  G+
Sbjct:   44 VTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGGY 227          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.251e-34
Identity = 76/172 (44.19%), Postives = 104/172 (60.47%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            CK       +DFFF+GL   G+T N  G      NVE  P LNTLG++  R+D AP G  P H HPRA+E++ V+ G + VGFV++        SKV+ +G+ F  P GL+HFQ+N G  +A A +  NSQ PG +  A A+FGA+P I    LAK+FQ+D + +K L+ KF
Sbjct:   63 CKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVST---AGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.940e-34
Identity = 87/186 (46.77%), Postives = 114/186 (61.29%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKP------GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFI 547
            V VNG  CKDP     +DFFFSG+G+P      G TA+R     T  +V+ IPGLNTLG SA R+D AP G  PPH HPRASE  +VL G ++ GFVTS   ++ +++KVL +GD F  P GL+HF  N G   A  Y++L+SQ PG + +ADA+  A  P+  D +AK    D  TV  ++  FI
Sbjct:   46 VRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRR-YGFTARSVD-IPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTS-YPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRANFI 226          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.042e-31
Identity = 70/163 (42.94%), Postives = 96/163 (58.90%), Query Frame = 2
Query:   56 EDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            EDFF+SGL  P NT+N  G+    AN+   PGLNTLGIS + +  AP G   PH HP  +E  +V+EG++ VGF+T+   N TL SKV+  GD FV P GLIH++ N+GKT     + +    P E+ +   +    P I  + L  AF+ D KT+  L+ KF
Sbjct:   66 EDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.189e-31
Identity = 76/177 (42.94%), Postives = 101/177 (57.06%), Query Frame = 2
Query:   14 VNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            V+G  CK       +DFF   + +  +T+N  GV+ T A V   PGLNTLG+S  R D AP G  PPH HPRASE++LVL G + VGF T+    N L SKV+ + + FV P GL HFQ N+G  NA   +  +SQ PG +T   A+F   P +  + LAK F +    V  ++ KF
Sbjct:   48 VDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKF 221          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.393e-30
Identity = 70/174 (40.23%), Postives = 107/174 (61.49%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGK-TNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTV 523
            +F+NGK CKDP  A   DF  S L +PGNT  +   ++ T      +PGLNT+G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  + ++ L+ G+ FVFP GLIHF +NI   ++A+A S L+SQ PG   ++ + F + PP   + L  A+ ++ + V
Sbjct:   38 IFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDINGQDV 208          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.343e-29
Identity = 73/172 (42.44%), Postives = 94/172 (54.65%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            CK+      EDF FSGL   GN     G        E  PGLNTLGIS  R D  P    PPH HPRA+E+  +++G ++ GFV S   NN + +KV+ +G+  V+P GL+HFQ N+G   A     LNSQ PG   I   VFG+   IN + L KAF L  K +  L+ +F
Sbjct:   54 CKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSG--INEELLMKAFGLSLKQIGTLKKRF 219          
The following BLAST results are available for this feature:
BLAST of DY271419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL35_ORYSJ1.841e-3644.02Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU3.141e-3644.51Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL38_ORYSJ4.102e-3645.35Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ3.473e-3544.57Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ2.251e-3444.19Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ2.940e-3446.77Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH3.042e-3142.94Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL12_ORYSJ5.189e-3142.94Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH4.393e-3040.23Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL32_ARATH6.343e-2942.44Germin-like protein subfamily 3 member 2 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YO19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271419 ID=DY271419; Name=DY271419; organism=Citrus clementina; type=EST; length=930bp
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
AACCAGAAGATTTCTTCTTCTCAGGGCTTGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATG
GCCAAAGGCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTC
CTGGAAGGAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAA
TTGGTTTGATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCC
TATTCTGCTCTCAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGC
GGTCTTTGGAGCCAATCCTCCAATAAATCCCGATTTTCTTGCCAAGGCAT
TCCAGTTGGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTAAT
GGCCATTAGGAGAAGGAATTAATGAGCCTTAATATAAATGGCCCTCTTTA
CTAGTGGCTTTACTGGATTTAGCTCCAGATTATCATATCTTAATTAAATG
TAAAAAAACAACTCTCCTCTAGAAAAAACAAACAAAAAAAAAAAAACCCC
CGCTTTCTGGAACAAAGTTGGGCAATAAAAAAAAGCCTTTGCCTAACAAT
TTTGCTGCCCCACAGTAGGCCCCAACAGCCACAATAAAACATCTCCTCAC
ACCCACCCGGCACACCCTACTAACACATTGCCAAACAGGAACAACACCTG
CTCACCTTCCCCCACCCCAGGCACATAACCCAAACATTCCACAAGTAACT
ACCGACCCCCCACTCCCACCCCACCACCAC
back to top