DY271419

Overview
NameDY271419
Unique NameDY271419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.343e-29
Identity = 75/172 (43.60%), Postives = 96/172 (55.81%), Query Frame = 2
Query:   20 GKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            G  CK P +    DF +SGLG  GNT N      T A   Q PG+N LGIS  R+D  P G  P H HP ASE+LLV++GT+  GFV SD   NT   K L KGD  VFP GL+HFQ N G T A+A+ + +S  PG   +  A+F     +  + +A+   LD   +K L+
Sbjct:   36 GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALF--KNDLATELIAQTTLLDAPQIKKLK 202          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.846e-28
Identity = 76/172 (44.19%), Postives = 97/172 (56.40%), Query Frame = 2
Query:   20 GKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            G  CK P      DF +SGLG  GNT N +    T A   Q PG+N LGIS  R+D  P G  P H HP ASE+LLV++GT+  GFV SD   NT   K L KGD  VFP GL+HFQ N G T A+A+ + +S  PG   +  A+F  + P   + +A+   LD   +K L+
Sbjct:   36 GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLP--TELIAQTTFLDAAQIKKLK 202          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.410e-28
Identity = 76/172 (44.19%), Postives = 99/172 (57.56%), Query Frame = 2
Query:   20 GKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            G  CK P   K  DF FSGLG  GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+L+V +GT+  GFV SD   NT   + L KGD  VFP GL+HFQ N G+  A+A+++  S  PG   +  A+F  + P   + +A+   LD   +K L+
Sbjct:   41 GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLP--TEVIAQTTFLDAAQIKKLK 207          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.196e-27
Identity = 74/169 (43.79%), Postives = 92/169 (54.44%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            C  P   K  DF FSGLG PGNT N +    T A   Q PGLN LG+S  R+D AP G  P H HP ASE+L VL G++  GFV+S    N +  + L  G   VFP GL+HFQ N GK++A A    NS  PG   +  A+F  + P   + +     LD  TVK L+
Sbjct:   38 CIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS---ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLP--TELVVGTTFLDATTVKKLK 201          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.041e-27
Identity = 71/173 (41.04%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDY-APYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            C+ P      DF FSG+   GN +   G         Q PGL+TLG+S  R D  A  G  PPH HPRA+E  LVL G ++ GFV S      L +KVL +G+  VFP  ++HFQ N+G T A  Y A NS+ PG + I   VFG+   I    L +AF L P  ++ L+ +F
Sbjct:   52 CRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGSG--IREAVLERAFGLTPAELRRLEKRF 219          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.848e-26
Identity = 66/152 (43.42%), Postives = 89/152 (58.55%), Query Frame = 2
Query:   17 NGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPP 472
            +G  CK+P      DF FSGLGK GNT+N +    T A      GLN L +S  R+D A  G  P H HP ASE+L+V++GT+  GF++S    N +  K L++GD+ VFP GL+HFQ N GK  A+A+ A  S  PG   +  A+F  + P
Sbjct:   37 SGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP 185          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.848e-26
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 2
Query:   17 NGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPP 472
            +G  CK+P      DF F+GLG  GNT+N +    T A      G+N LG+S  R+D A  G  P H HP ASE+L+V++GT+  GF++S    N +  K LN+GD+ VFP GL+HFQ N GK  A+A+ A  S  PG   +  A+F  + P
Sbjct:   37 SGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP 185          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.026e-26
Identity = 73/169 (43.20%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   29 CKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            C  P   K  DF FS LG PGNT N +    T   V Q P LN LGIS  R+D AP G  P H HP ASE+L VL+G++  GF++S    N++  + L  G   VFP GL+HFQ N GKT A A    +S  PG + I D    AN  ++ + ++    L P TVK L+
Sbjct:   38 CIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPG-LQILDFALFAN-TLSTELVSATTFLPPATVKTLK 200          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.494e-25
Identity = 68/176 (38.64%), Postives = 95/176 (53.98%), Query Frame = 2
Query:   17 NGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 544
            +G  C+        DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+L VL+G L  GF++S   +N +  K ++KG  FVFP GL+HFQ+N G T AVA++A +S  PG   +  A+F  N P +  ++ K   L    V+ L+ KF
Sbjct:   44 SGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTS--YVVKGTFLAEAEVRRLKSKF 215          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.258e-25
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 2
Query:   59 DFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+L V +GT+  GF+TS   +NT+ ++ L  GD  VFP GL+H+Q+N G++ AVA  A +   PG      A+F  N P     + K   LD   VK L+
Sbjct:   52 DFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLP--SAIVEKVTFLDDAQVKKLK 206          
The following BLAST results are available for this feature:
BLAST of DY271419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AB19B_PRUPE6.343e-2943.60Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
AB19A_PRUPE1.846e-2844.19Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
ABP20_PRUPE2.410e-2844.19Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL31_ARATH1.196e-2743.79Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL24_ORYSJ2.041e-2741.04Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GLP1_SINAL3.848e-2643.42Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL33_ARATH3.848e-2642.76Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_BRANA5.026e-2643.20Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL813_ORYSJ2.494e-2538.64Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ7.258e-2543.40Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271419 ID=DY271419; Name=DY271419; organism=Citrus clementina; type=EST; length=930bp
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
AACCAGAAGATTTCTTCTTCTCAGGGCTTGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATG
GCCAAAGGCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTC
CTGGAAGGAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAA
TTGGTTTGATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCC
TATTCTGCTCTCAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGC
GGTCTTTGGAGCCAATCCTCCAATAAATCCCGATTTTCTTGCCAAGGCAT
TCCAGTTGGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTAAT
GGCCATTAGGAGAAGGAATTAATGAGCCTTAATATAAATGGCCCTCTTTA
CTAGTGGCTTTACTGGATTTAGCTCCAGATTATCATATCTTAATTAAATG
TAAAAAAACAACTCTCCTCTAGAAAAAACAAACAAAAAAAAAAAAACCCC
CGCTTTCTGGAACAAAGTTGGGCAATAAAAAAAAGCCTTTGCCTAACAAT
TTTGCTGCCCCACAGTAGGCCCCAACAGCCACAATAAAACATCTCCTCAC
ACCCACCCGGCACACCCTACTAACACATTGCCAAACAGGAACAACACCTG
CTCACCTTCCCCCACCCCAGGCACATAACCCAAACATTCCACAAGTAACT
ACCGACCCCCCACTCCCACCCCACCACCAC
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