DY271419

Overview
NameDY271419
Unique NameDY271419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.238e-24
Identity = 66/150 (44.00%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   11 FVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFG 460
            F+NG  CK+P     +DF  + L + G+T N L  + T     + PGLNTLG+S  R D    G  P H HPR+SE+L V++G +  GFV +   NN +   VL KGD FVFP GL+HF  + G   A A+S  NSQ PG + I + VFG
Sbjct:   38 FINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.617e-24
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = 2
Query:   14 VNGKFCKDPKLAKPEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIG-KTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            +NG  C DP LA+ + F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L +++L  G+AFVFP  ++HF +N+     AV  S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   46 LNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 63/163 (38.65%), Postives = 83/163 (50.92%), Query Frame = 2
Query:    8 VFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAK 496
            +F+NG FCK P      DF    L   G+  N +          + PGLNTLGIS  R D A  G   PH HPRASE++ V  G++  GF  +      L  K L +GD F+FP GL+HF  N G   A  +S LNSQ PG + I  A+F  +  +    +A+
Sbjct:   42 LFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMAR 201          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.371e-22
Identity = 64/163 (39.26%), Postives = 92/163 (56.44%), Query Frame = 2
Query:   59 DFF-FSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            DFF F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+LLV++G L VGF+ +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S  PG + +   VFG    I+   LAK+F+ D  T+  L+
Sbjct:   48 DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTG--IDDAVLAKSFKTDVPTILKLK 205          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 2
Query:  122 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            T A + + P LN   +S   + Y P    PPH HPR++E+LL+++G L VGFV +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S   G +++   VFG N  I+   LAK+F+ D  T++ L+
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLK 205          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 68/173 (39.31%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   17 NGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            +G  CK+       DF +SGL KPGNT N +    T A V Q PG+  LG++  R+D AP G  P H HP ASEIL V+EGT+   F++S    N +  K L  GD  VFP GL+ FQ   GK  A     L  + PG + I +          P  +A    LD  T+K L+
Sbjct:   40 SGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG-LQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLK 207          
BLAST of DY271419 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.772e-19
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   89 GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIG-KTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 535
            GN+ +   +  T A   + P L    +S   + +      PPHIHPRASE+L+V++G L VG V + + N T+ ++ L  GD FVFP G++HFQFN G    A A+SA  S  PG I++  A+FG+   I+   L K+   D  TV  L+
Sbjct:   58 GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGSG--IDDTILDKSMHTDQATVDQLK 204          
The following BLAST results are available for this feature:
BLAST of DY271419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL34_ARATH1.238e-2444.00Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL31_ORYSJ1.617e-2438.98Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ1.369e-2338.65Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL92_ORYSJ3.371e-2239.26Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ2.185e-2141.30Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GLP1_IPONI4.868e-2139.31Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL91_ORYSJ7.772e-1938.67Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271419 ID=DY271419; Name=DY271419; organism=Citrus clementina; type=EST; length=930bp
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
AACCAGAAGATTTCTTCTTCTCAGGGCTTGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATG
GCCAAAGGCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTC
CTGGAAGGAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAA
TTGGTTTGATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCC
TATTCTGCTCTCAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGC
GGTCTTTGGAGCCAATCCTCCAATAAATCCCGATTTTCTTGCCAAGGCAT
TCCAGTTGGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTAAT
GGCCATTAGGAGAAGGAATTAATGAGCCTTAATATAAATGGCCCTCTTTA
CTAGTGGCTTTACTGGATTTAGCTCCAGATTATCATATCTTAATTAAATG
TAAAAAAACAACTCTCCTCTAGAAAAAACAAACAAAAAAAAAAAAACCCC
CGCTTTCTGGAACAAAGTTGGGCAATAAAAAAAAGCCTTTGCCTAACAAT
TTTGCTGCCCCACAGTAGGCCCCAACAGCCACAATAAAACATCTCCTCAC
ACCCACCCGGCACACCCTACTAACACATTGCCAAACAGGAACAACACCTG
CTCACCTTCCCCCACCCCAGGCACATAACCCAAACATTCCACAAGTAACT
ACCGACCCCCCACTCCCACCCCACCACCAC
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