DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.254e-58
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 3
Query:  147 GLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GLIKING PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIA+ALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.254e-58
Identity = 105/142 (73.94%), Postives = 126/142 (88.73%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.254e-58
Identity = 105/148 (70.95%), Postives = 128/148 (86.49%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            M   +  PV++VQ F R+KTA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +FAGVD+R+RV GGGH +QIYAIRQ+I++ALVAFYQKYVDE SKKEIKDILV+YDRTLLV DPRRCEPKKFGG GARAR+QKSYR
Sbjct:    1 MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.477e-58
Identity = 104/142 (73.24%), Postives = 126/142 (88.73%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQ+I++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.757e-57
Identity = 101/145 (69.66%), Postives = 129/145 (88.97%), Query Frame = 3
Query:   63 AKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            A+  P+++VQ F R+KTA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ VKGGGH +Q+YAIRQ+I++AL+AFYQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:    7 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.757e-57
Identity = 102/148 (68.92%), Postives = 129/148 (87.16%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            M  A+  PV +VQ F R+KTA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +FAGVD+RIRV GGGH +QIYAIRQ+I++ALV+FYQKYVDE S+KE+KDIL +YDRTLLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:    1 MVKARKEPVNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.950e-52
Identity = 96/140 (68.57%), Postives = 117/140 (83.57%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++SVQCF ++  A AV +CK G+GLIK+NG P+ LV+PEILR K YEPIL+ G  +FAGVD+R+RV GGGH SQIYAIRQ+I++A+VA+YQK+VDE SK E+K  L+ YDRTLLVADPRR EPKKFGG GARAR QKSYR
Sbjct:    1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RS16_MOUSE1.119e-5874.6540S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN1.119e-5874.6540S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN1.119e-5874.6540S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_LUPPO4.254e-5895.7340S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_ICTPU4.254e-5873.9440S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_DROME4.254e-5870.9540S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_HETFO9.477e-5873.2440S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_SPOFR2.757e-5769.6640S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_AEDAE2.757e-5768.9240S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_SCHPO5.950e-5268.5740S ribosomal protein S16 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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