DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 8.591e-51
Identity = 94/140 (67.14%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V+SVQ F R+KTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH +QIYA+RQ++A+ALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+QKSYR
Sbjct:    5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 95/140 (67.86%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V SVQ F ++K+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IA+ LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARFQKSYR 143          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 95/139 (68.35%), Postives = 115/139 (82.73%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            +SVQ F ++KTA AV + K G+GLIKING PI LV+PEILRFK YEP+ L+G  +F G+D+R++V GGGH SQ+YAIRQ+IA+ LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    4 QSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 95/140 (67.86%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V SVQ F ++K+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R+RV GGGH SQ+YAIRQ+IA+ LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARFQKSYR 143          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 94/140 (67.14%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V SVQ F ++K+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +F+ +D+R+RV GGGH SQ+YAIRQ+IA+ LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 91/139 (65.47%), Postives = 116/139 (83.45%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++VQ F ++K A AV  C +G+GLIK+NG P++L  PEILR K YEPILLLG  +FA VD+R++V GGGH SQ+YA+RQ+IA+A+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct:    4 QAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 93/140 (66.43%), Postives = 116/140 (82.86%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V SVQ F ++K+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R++V GGGH SQ+YAIRQ+IA+ LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RFQKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR 143          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 91/138 (65.94%), Postives = 113/138 (81.88%), Query Frame = 3
Query:   84 SVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            SVQ F ++KTA AV + K G+GLIK+NG PI LV+PEILRFK YEP+ L+G  +F  +D+R++V GGGH SQ+YAIRQ+IA+ LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    5 SVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V SVQ F ++K+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IA+ L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+QKSYR
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRYQKSYR 143          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.161e-47
Identity = 87/137 (63.50%), Postives = 116/137 (84.67%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            VQ   +++TAVAV Y   G+GLIK+NG P+E ++P+ L+ K YEP+L++G+  F+ VD+R+RV+GGG  +QIYAIRQ+IA+++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   11 VQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RS16_CAEEL8.591e-5167.1440S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_CANGA1.914e-5067.8640S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_CANAL1.914e-5068.3540S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_ASHGO1.914e-5067.8640S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_YEAST3.265e-5067.1440S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_NEUCR9.499e-5065.4740S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_KLULA9.499e-5066.4340S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_DEBHA4.714e-4965.9440S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_SACEX5.212e-4863.5740S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_DICDI1.161e-4763.5040S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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