DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.747e-25
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTA+A    + G+G ++IN  P+EL  PE+ R K  EP+ L G      VD+ +RV GGG   Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+GGRGARAR QKSYR
Sbjct:  159 KRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVVGGGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYGGRGARARRQKSYR 282          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METKA (30S ribosomal protein S9P OS=Methanopyrus kandleri GN=rps9p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            VQ   ++KTA+A    + G G +++N  P+ ++EPE+ R K  EP+++ G    + VD+ ++V+GGG  SQ  A R +IA+ LV +           +++D  + YDR +L  DPRR EPKKFGGRGARAR QKSYR
Sbjct:    5 VQTTGKRKTAIARAVIREGEGRVRVNKRPVNIIEPEMARMKIMEPLIIAGEDIVSQVDIDVKVQGGGWMSQAEAARIAIARGLVEW-------TGDPDLRDAYMAYDRHMLKGDPRRKEPKKFGGRGARARRQKSYR 134          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METST (30S ribosomal protein S9P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps9p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 64/132 (48.48%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTA+A    K G G +K+N  P+EL EPE+ R K +EP+ L G      VD+ +RV GGG   Q  A R  IA+ LV +            +KD  V+YDRT+LV DPRR E KKFGG GARAR QKSYR
Sbjct:   10 KRKTAIARGTVKEGTGRVKVNRKPVELYEPELARLKIFEPLELAG-DIVNSVDINVRVVGGGIMGQAEAARMVIAKGLVEY-------TGDMNLKDRYVQYDRTMLVGDPRRSESKKFGGPGARARKQKSYR 133          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +Q   ++KTA+A    + GRG ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +Q   ++KTA+A    + G+G ++ING P+ELVEPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +Q   ++KTA+A    + G+G ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QKSYR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEW-------TGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_THEVO (30S ribosomal protein S9P OS=Thermoplasma volcanium GN=rps9p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTAVA    K+G+G+I ING P EL   E+LR K  EP+ L    +  G+D+ ++VKGGG T Q  A R +IA+ +V F Q         E++++  +YDRTL+V D R   PKK GGRGARA+ QKSYR
Sbjct:    9 KRKTAVARAVVKKGKGIITINGTPAELYPVEVLRNKILEPVKL-AEDKAKGIDVTVKVKGGGVTGQADASRTAIARGIVKFLQD-------NELENLFRQYDRTLIVNDVRIKLPKKPGGRGARAKKQKSYR 132          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_HALSA (30S ribosomal protein S9P OS=Halobacterium salinarium GN=rps9p PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTAVA      G G ++IN  P+ELVEPE+ R K  EP  + G      VD+ I V GGG   Q  A+R +IA+ LV  Y          E++D    +DR+LLV D R+ E KK+GG GARAR+QKSYR
Sbjct:    8 KKKTAVARATVSDGEGRVRINSQPVELVEPEMARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAELRDAFREFDRSLLVNDVRQRESKKWGGPGARARYQKSYR 132          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTAVA    K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTL+V D R   PKK GGRGARA+ QKSYR
Sbjct:    6 KRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLNDT---ELENLFRQYDRTLIVNDVRIKLPKKAGGRGARAKKQKSYR 129          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_HALMA (30S ribosomal protein S9P OS=Haloarcula marismortui GN=rps9p PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTAVA    + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+GGG   Q  A R +IA+ LV       D  +  E++D  + +DR+LLV D R+ EPKK+GG GARAR+QKSYR
Sbjct:    8 KKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVEGGGVMGQADAARTAIARGLV-------DHTNDAELRDAFMEFDRSLLVNDVRQSEPKKWGGPGARARYQKSYR 132          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RLSX_METTH4.747e-2548.48Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_METKA6.200e-2543.0730S ribosomal protein S9P OS=Methanopyrus kandleri... [more]
RS9_METST4.019e-2448.4830S ribosomal protein S9P OS=Methanosphaera stadtm... [more]
RS9_PYRHO1.169e-2342.4530S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB1.169e-2343.1730S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU1.994e-2341.7330S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]
RS9_THEVO5.803e-2346.9730S ribosomal protein S9P OS=Thermoplasma volcaniu... [more]
RS9_HALSA2.880e-2245.4530S ribosomal protein S9P OS=Halobacterium salinar... [more]
RS9_THEAC3.761e-2245.4530S ribosomal protein S9P OS=Thermoplasma acidophi... [more]
RS9_HALMA8.379e-2242.4230S ribosomal protein S9P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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