DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METJA (30S ribosomal protein S9P OS=Methanocaldococcus jannaschii GN=rps9p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            ++K A+A    + G+G I+IN  PIEL+EP+  R K  EPILL G    + +D+ + VKGGG   Q+ A R +I +A+V F          KE++D  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:   10 KRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVKGGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHKPSRSTKGPRAKRQKSYR 136          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_PYRKO (30S ribosomal protein S9P OS=Pyrococcus kodakaraensis GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 57/139 (41.01%), Postives = 85/139 (61.15%), Query Frame = 3
Query:   87 VQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +Q   ++KTAVA    + G+G ++IN  P+E++EPEI RF   EP++L G    + VD+ ++V+GGG   Q  A R +IA+ALV +        +   +K+  ++YDRT+LV D RR EP K     +G RA+ QKSYR
Sbjct:    4 IQTAGKRKTAVARATIREGKGRVRINHKPVEIIEPEIARFTIMEPLILAGEEIVSRVDIDVKVEGGGFMGQAEAARVAIARALVEW-------TNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METTP (30S ribosomal protein S9P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 53/132 (40.15%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTA+A    K G+G I+IN  P+E++EP + R K  EP+++     F+ VD+ + V GGG   Q  A+R ++A+ ++ +            +K+    YDR LLV+D R+ E KKFGG GARA++QKSYR
Sbjct:    9 KKKTAIARATFKEGKGRIRINNVPLEIIEPALARMKMMEPVIMAAE-AFSSVDVDVSVMGGGVMGQADAVRTALARGILEW-------TGDAALKEAYAEYDRNLLVSDHRQKEKKKFGGLGARAKYQKSYR 132          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METAC (30S ribosomal protein S9P OS=Methanosarcina acetivorans GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V+ V    + KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G    +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GARA++QKSYR
Sbjct:    2 VKVVNSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEW-------TNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKYQKSYR 134          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            M+   +  ++ V    ++KT++A    K G G + IN  P+E ++ E+ + K  EP+LL+G      VD+R+ V GGG+ SQ  A+R +IA+ LV F+       +  E+K +   YDR +L  DPR+ EPKK+G   AR R+QKSYR
Sbjct:    1 MSQTLSDKIKIVVSSGKRKTSIARAVIKPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRWQKSYR 140          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++K A+A    + GRG + ING P+E+   E+ R K  EP+L+ G    + VD+R+RV+GGG   Q  A+R +IA+ LV F++         + +D+ S ++++   + +DRT+LV DPRR EP+K+    AR R+QKSYR
Sbjct:   12 KRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METMA (30S ribosomal protein S9P OS=Methanosarcina mazei GN=rps9p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            V+ +    + KTA A     +G G ++IN  P+EL  PE+   K  EP+L+ G+   +G+D+ + V+GGG   Q  A+R ++A+ +V +        +   I+D    YDR LLV+D R+ E K FGG GAR+++QKSYR
Sbjct:    2 VKVINSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGKDVVSGLDINVDVRGGGIVGQANAVRTAVARGIVEW-------TNDTTIRDNFAAYDRNLLVSDSRQKEAKNFGGPGARSKYQKSYR 134          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METM7 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps9p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ +A+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    9 KRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METM5 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps9p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +++TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  SQ+ A R ++ +A+V F         K E+K+  + YDRTLLV+D RR EP K     +G RA+ QKSYR
Sbjct:    9 KRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSDIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 497
            +++TA+A      G G I+IN  P+EL+EP+ ++ K  EP++L G      +D+ + VKGGG  SQ+ A R ++ +A++ F         K E+K++ + YDRTLLV+D RR EP K     +G RAR QKSYR
Sbjct:    9 KRRTAIARATATEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EILGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLLVSDARRTEPHKPSKSSKGPRARRQKSYR 134          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RS9_METJA1.429e-2144.0330S ribosomal protein S9P OS=Methanocaldococcus ja... [more]
RS9_PYRKO2.438e-2141.0130S ribosomal protein S9P OS=Pyrococcus kodakaraen... [more]
RS9_METTP2.438e-2140.1530S ribosomal protein S9P OS=Methanosaeta thermoph... [more]
RS9_METAC3.184e-2139.2930S ribosomal protein S9P OS=Methanosarcina acetiv... [more]
RS9_DESK13.184e-2138.5130S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_AERPE3.184e-2139.7230S ribosomal protein S9P OS=Aeropyrum pernix GN=r... [more]
RS9_METMA4.159e-2137.8630S ribosomal protein S9P OS=Methanosarcina mazei ... [more]
RS9_METM71.580e-2042.5430S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METM52.064e-2042.5430S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_METVS3.520e-2041.0430S ribosomal protein S9P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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