DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_SYNFM (30S ribosomal protein S9 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  102 RQKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ++KTAVA  + K G G + IN   IE  ++ E  +   Y+P++L G   F  +D+ + V GGG + Q  AIR  I++AL+ F           E +++L R     L  D R  E KK+G R ARARFQ S R
Sbjct:   11 KRKTAVARVWLKPGSGSVTINKRTIEEYIDRETSKMVIYQPLVLTGT--FGKLDVTVNVLGGGGSGQAGAIRHGISKALLEF---------NPEFREVLKR--AGFLTRDSRVKERKKYGRRSARARFQYSKR 130          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_PELLD (30S ribosomal protein S9 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            E +    R+KT+VA  +   G+G + IN  P+E     E+ R  A  P++L    +    D+++ VKGGG + Q  A+   IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMTPGKGRVIINKLPVEEYFRDEVKRLHALRPLVLT--EKTEDFDIKVNVKGGGLSGQSGAVSLGIARALTEF-----DEAARAVLKQ------ERLLTRDPRMVERKKFGRKKARKSFQFSKR 129          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_CHLTE (30S ribosomal protein S9 OS=Chlorobium tepidum GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            E +    R+KT+VA  +   G+G I +N  P+E   + E  R +A +P+ +  +      D+ I VKGGG T Q  A+  +IA+ALV F     DE  +  +     R DR LL  DPR  E KK+G + AR  FQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGKIVVNKLPVEEYFKDEFKRSQALKPLAVAEKQN--DFDITINVKGGGLTGQSGAVSLAIARALVEF-----DESIRAAL-----RPDR-LLTRDPRMVERKKYGKKKARKSFQFSKR 129          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS9_CHLPD (30S ribosomal protein S9 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            E +    R+KT+VA  +   G+G + IN  P E     E+ R +A  P+ L    +    D+++ V GGG + Q  A+  +IA+AL  F     DE ++  +K         LL  DPR  E KKFG + AR RFQ S R
Sbjct:    3 EVIDTVGRRKTSVARVFMSPGKGRVIINKLPAEEYFRDEVKRQQALRPLALT--EKMEDFDIKVNVHGGGVSGQTGAVSLAIARALTEF-----DESARAVLKK------EKLLTRDPRMVERKKFGRKKARKRFQFSKR 129          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RS9_SYNFM1.341e-1137.5930S ribosomal protein S9 OS=Syntrophobacter fumaro... [more]
RS9_PELLD3.901e-1135.0030S ribosomal protein S9 OS=Pelodictyon luteolum (... [more]
RS9_CHLTE6.655e-1137.1430S ribosomal protein S9 OS=Chlorobium tepidum GN=... [more]
RS9_CHLPD6.655e-1135.0030S ribosomal protein S9 OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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