DY271435

Overview
NameDY271435
Unique NameDY271435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length981
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.302e-27
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  243 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830
            VA+S+E ++E +   +   S      +L+VGNLPFS+ S+QL+ +F  AG V  VE++YD+VT RSRGF FVTM SVEE + A + F+G ++ GR ++VN                            +++YV NLSW +    L   F +Q   + AKV+YDR SGRS GF         + +   L+++N V+L
Sbjct:   89 VALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFS-SAEAMNSALDTMNEVEL 283          

HSP 2 Score: 69.3218 bits (168), Expect = 3.806e-11
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  321 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542
            KL+V NL +++ S  L   F         +VIYD+ +GRSRGFGF+T SS E + +A    N  ELEGRPLR+N
Sbjct:  218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291          
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.354e-18
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 3
Query:  216 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758
            ++P        V+ E        S  DG       +L+VGN+P ++++ +L  + E  G +E+ EV+YDK +GRSR FGFVTM +VE+  A  ++ N  E+ GR ++VN                             +VY+GNL+  V +  L+  F E+GKVL AKV     + +S GF
Sbjct:   53 TNPPLLKVRAVVTEETSSSSTASSSSDGEGAR---RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPY---KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGF 227          
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.636e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539
            ++L+VG+L F++    L G+FE  G ++ + ++ D  TGRS+G+GF+T S  E    A +Q NG+EL GRP+RV
Sbjct:  263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336          
The following BLAST results are available for this feature:
BLAST of DY271435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ROC5_NICSY1.302e-2736.7333 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RRP2_SPIOL9.354e-1832.0430S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
RBM39_PONAB3.114e-1343.24RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE3.114e-1343.24RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN3.114e-1343.24RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBM23_HUMAN2.636e-1243.24Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271435 ID=DY271435; Name=DY271435; organism=Citrus clementina; type=EST; length=981bp
GCTTTCAAAGAAACTCAAAAACCCTTGAGCCAGTAGCCATGTCTACCACG
TCAGCTTCTTCGCTGGTGCTCCCATCTCTCAGTCCCAAAACCCTAGCCTT
CTACAACTCAAAACCCACTTCATTTTCTCTCTTATCTTCCTCCTCTTCTC
ACAAACTTCTAGCGAAGCCCATCTCGATATCCTCTTCTTTCATCCATTCT
TTTCAACCCTTGCCCTCTTCCCCCTCTCGTTTCGTCAGAAACGTAGCCGT
TTCGTCCGAGTTTGACCAGGAAGAGGACCTTTTGAGCGATGAAGACGGTT
CGAATTTCTCCCCCGACTTGAAACTTTTTGTGGGTAACCTTCCTTTTAGC
GTTGACAGTGCTCAGCTTGCTGGCTTGTTTGAAACCGCTGGAAATGTTGA
GATGGTTGAGGTAATATATGACAAGGTCACTGGGAGAAGCAGAGGATTTG
GTTTTGTGACCATGTCAAGTGTTGAGGAAGTTGAAGCAGCTGCTCAGCAG
TTCAATGGCTATGAACTCGAGGGCCGACCCCTGAGGGTGAACTCTGGACC
TCCTCCTCCTAGGAGGGAAGAATTCTCTCCCAGAGGGCCCAGAGGAGGTG
GTGCTGGTGCGCCTTCTAGTGGTGGCAACCGTGTTTATGTTGGTAACCTT
TCATGGGGTGTTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGG
GAAGGTTTTGGAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGC
CNGGGTTTCGGGTTTGTGACTTACCGTTCCTGCTGAAGAGGTTGACAATG
CCATTGAATTCCCTGAATGGTGTAGATTTGGCCCGGTAGAGCAATTCAAG
TCCCCGTGGCCTGAGCAAGGCCACAAAGGCCGTCCATTTTGACCTGTGGC
CGAAACTAGTTTTCCCGTGGTTTTGAATTTAACCTAAGTTATTTGGGGTT
GGTAAAAGGCTGCCTTACCCTGGCCACCCAA
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