DY271435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.302e-27 Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 3 Query: 243 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 VA+S+E ++E + + S +L+VGNLPFS+ S+QL+ +F AG V VE++YD+VT RSRGF FVTM SVEE + A + F+G ++ GR ++VN +++YV NLSW + L F +Q + AKV+YDR SGRS GF + + L+++N V+L Sbjct: 89 VALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFS-SAEAMNSALDTMNEVEL 283 HSP 2 Score: 69.3218 bits (168), Expect = 3.806e-11 Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 3 Query: 321 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 KL+V NL +++ S L F +VIYD+ +GRSRGFGF+T SS E + +A N ELEGRPLR+N Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 9.354e-18 Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 216 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758 ++P V+ E S DG +L+VGN+P ++++ +L + E G +E+ EV+YDK +GRSR FGFVTM +VE+ A ++ N E+ GR ++VN +VY+GNL+ V + L+ F E+GKVL AKV + +S GF Sbjct: 53 TNPPLLKVRAVVTEETSSSSTASSSSDGEGAR---RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPY---KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGF 227
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13 Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3 Query: 318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539 ++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +Q NG+EL GRP++V Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13 Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3 Query: 318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539 ++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +Q NG+EL GRP++V Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 3.114e-13 Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3 Query: 318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539 ++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +Q NG+EL GRP++V Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.636e-12 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 3 Query: 318 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 539 ++L+VG+L F++ L G+FE G ++ + ++ D TGRS+G+GF+T S E A +Q NG+EL GRP+RV Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336 The following BLAST results are available for this feature:
BLAST of DY271435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271435 ID=DY271435; Name=DY271435; organism=Citrus clementina; type=EST; length=981bpback to top |