DY271439

Overview
NameDY271439
Unique NameDY271439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALNS (Putrescine aminotransferase OS=Salmonella newport (strain SL254) GN=patA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALCH (Putrescine aminotransferase OS=Salmonella choleraesuis GN=patA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALA4 (Putrescine aminotransferase OS=Salmonella agona (strain SL483) GN=patA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.834e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALG2 (Putrescine aminotransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=patA PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALEP (Putrescine aminotransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=patA PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALDC (Putrescine aminotransferase OS=Salmonella dublin (strain CT_02021853) GN=patA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:   10 RGFGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            R F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++PN V + RG+G+  A+EF
Sbjct:  198 RPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SALAR (Putrescine aminotransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=patA PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+   F   K++GD+IA  + EPIQGE GVI+PP GYL  VR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V + RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVTFGNINAMRMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPDLVHDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_CITK8 (Putrescine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=patA PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+PV A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V++ RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPQGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPVGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFLQLAREYPDLVQDARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
[Close]
BLAST of DY271439 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   16 FGPLLPGHLKVDFGDITALEKIF---KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 588
            F PLLPG   V FG+I A+       K++GD +A  + EPIQGE GVI+PP GYL AVR LC ++  LMI DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV  +L   P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+E RG+G+  A+EF
Sbjct:  200 FMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEF 395
The following BLAST results are available for this feature:
BLAST of DY271439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAT_SALNS2.834e-4545.96Putrescine aminotransferase OS=Salmonella newport ... [more]
PAT_SALCH2.834e-4545.96Putrescine aminotransferase OS=Salmonella cholerae... [more]
PAT_SALA42.834e-4545.96Putrescine aminotransferase OS=Salmonella agona (s... [more]
PAT_SALG23.702e-4545.96Putrescine aminotransferase OS=Salmonella gallinar... [more]
PAT_SALEP3.702e-4545.96Putrescine aminotransferase OS=Salmonella enteriti... [more]
PAT_SALDC3.702e-4545.96Putrescine aminotransferase OS=Salmonella dublin (... [more]
PAT_SALAR1.837e-4445.41Putrescine aminotransferase OS=Salmonella arizonae... [more]
PAT_CITK81.837e-4445.41Putrescine aminotransferase OS=Citrobacter koseri ... [more]
PAT_SHIFL3.134e-4445.41Putrescine aminotransferase OS=Shigella flexneri G... [more]
PAT_SHIF83.134e-4445.41Putrescine aminotransferase OS=Shigella flexneri s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271439 ID=DY271439; Name=DY271439; organism=Citrus clementina; type=EST; length=929bp
GAGGCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGTTGA
TTTTGGTGATATAACTGCTCTAGAGAAAATCTTTAAAGAAAGTGGAGATC
AAATAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATA
ATTCCTCCAGATGGTTACTTGAAAGCTGTTAGAGATCTTTGCTCAAAGTA
TAACATCTTAATGATTGCTGATGAGATACAGAGTGGTTTAGCACGATCTG
GAAGAATGTTGGCCTCTGATTGGGAAGAAGTTCGCCCTGATATGGTGATA
CTAGGAAAGGCATTGGGTGGTGGAGTCATACCTGTCAGTGCAGTGCTTGC
AGACAAAGAAGTGATGCTTTGCATTCAACCTGGAGAGCATGGAAGCACCT
TCGGCGGAAATCCTTTGGCCAGTGCGGTGGCTATTGCCTCGCTGGATGTG
ATCAGAGATGAGAAACTTGCAGAGAGATCAGCGCATTTGGGAGAAGAGCT
CAGACAGCATCTTTTTAAAATTCAGCAGCAATTTCCAAACTACGTTAAAG
AGGTTCGAGGAAGAGGTTTGTTCAATGCCGTGGAGTTTGACAAGACGGCA
TTGCCTGTTTCTGCATATGACATCTGTCTAAAGATGAAGGAAAGGGGCAT
CCTTGCCTAACCCACTCCATGATACAATAGTCCCGGTTAACTCCCCCCCT
CTCCATAAATTCAATTGACCTCCAGAAGGGTCAAAGGCGCTGCATGAAGT
TTTGGAACTTGACCTGCCCAAAAAGCCGAAACCCCAACCCAGCAAAGCCC
CTGCCACCCCATGTTCCCGTTGTGGCAAAAATTAATAGGGCATAAAAATT
TAATAAATTCCCAATTCTTCCCCCCGGCAAGCCCAATTTCCCTCCCAACC
CCCTTGTTATCAAAACTTCTTGCCGTATG
back to top