DY271440

Overview
NameDY271440
Unique NameDY271440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            R  K V +G+ +VGKT L+  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V I+ + + +  S+ N ++KWI +++      V I+LVG K DL D +Q          ++  +GE+  K +    ++E S+K   NVK +F
Sbjct:   10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQ----------VTQEEGEKKAKELKI-MHMETSAKAGHNVKLLF 165          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 700
            K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   +L + + S+ +Y N    W+ + +  A P + IIL G K DL  D++  F++         AQ  EL        ++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLE-----ASRFAQENEL-------MFLETSALTGENVEEAF 162          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 50/176 (28.41%), Postives = 93/176 (52.84%), Query Frame = 2
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            +K + +G+  VGK+ L++ +  + F  +   T+  +F   ++ ++G+ V L +WDTAGQE +  L P  YRGA   I  + + S++S+E ++  W+ E+  Y     II  +V  K+D+          P  V ++  +G +  K      +IE S+KT++ V+  F+  I+  +Q
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLN-HWMQEVDTYCTNDNIIKMMVANKIDM----------PNRV-VTREEGLKFAKR-HRTLFIEASAKTKEGVQCTFEELIEKIIQ 174          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  200 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIK 715
            SR  K V +G G VGK+ + + + S+ FP D+ PT+ D +   + ++    NL + DTAGQ ++  +R    R  + FI+ +S+  + S+  V + K +          P++LVG K DL+  +Q          +S  +G  L +    P + E S+  +  +  VF A ++
Sbjct:   19 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQ----------VSKEEGLSLAREFSCP-FFETSAAYRYYIDDVFHALVR 180          
The following BLAST results are available for this feature:
BLAST of DY271440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_HUMAN1.958e-1429.17Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK1.958e-1429.17Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN1.958e-1429.17Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RAB6A_PONAB1.958e-1432.74Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_MOUSE1.958e-1432.74Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_HUMAN1.958e-1432.74Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RYH1_SCHPO2.558e-1432.74GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RAB4B_DANRE2.558e-1433.73Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB18_CAEEL2.558e-1428.41Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
RIT1_MOUSE3.340e-1427.75GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271440 ID=DY271440; Name=DY271440; organism=Citrus clementina; type=EST; length=918bp
CGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTATTTCCCGGCCG
AAACAAGCAGATGATGGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTC
CTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTTTCTCTGAGAGTTTAT
ATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAAAAAATGAGCGCAT
CAAGGTTTATTAAGTGCGTGACGGTAGGCGATGGAGCTGTGGGTAAAACT
TGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTACGGATTATGTGCC
AACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCACGG
TTAATCTTGGATTATGGGATACTGCTGGACAAGAGGATTATAACAGATTA
AGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCT
TATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGT
TGAAACATTATGCACCTGGTGTGCCAATAATTCTTGTTGGAACAAAGCTT
GATCTTCGGGATGATAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCC
CATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGTTGATTGGTGCACCTG
CTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTT
GATGCAGCCATCAAGTTTGCCCTCCAACCCCCAAAGACGAAAAAAAAAAA
GAATAAACCACAAAAGGCCGGCTCTATATTGTGATTGAAATTAGGTGTAA
AAAAATTATGAACCTCTGTCCTTTCTCAATTCCCCCCTCATCTTTCTTCC
TTTGGTCTGGAAAAAAATTCCATTTGACAAACTGGGGAGGATCCCCCCGG
GAAAACCTCAGGGGGTTT
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