DY271440

Overview
NameDY271440
Unique NameDY271440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.534e-51
Identity = 95/170 (55.88%), Postives = 129/170 (75.88%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 712
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.003e-51
Identity = 94/170 (55.29%), Postives = 129/170 (75.88%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 712
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 2.003e-51
Identity = 94/170 (55.29%), Postives = 129/170 (75.88%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 712
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.003e-51
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++     +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 178
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 178
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFAL 724
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS+ENV +KW+PE+ H+    P +LVGT++DLRDD      +      P+ST  GE+L K + A  Y+ECS+ TQ+ +K VFD AI  AL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEKLAKNKQKPVSTDVGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 178
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.417e-51
Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 178
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 9.942e-51
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.942e-51
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 2 
Query:  209 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI  AL+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILSALE 178
The following BLAST results are available for this feature:
BLAST of DY271440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_HUMAN1.534e-5155.88Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOQ_RAT2.003e-5155.29Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE2.003e-5155.29Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
CDC42_AEDAE2.003e-5155.43Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_DROME2.616e-5155.43Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_CAEEL2.616e-5156.32Cell division control protein 42 homolog OS=Caenor... [more]
CDC42_ANOGA2.616e-5155.43Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_DROPS3.417e-5155.43Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
CDC42_RAT9.942e-5154.86Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG9.942e-5154.86Cell division control protein 42 homolog OS=Sus sc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271440 ID=DY271440; Name=DY271440; organism=Citrus clementina; type=EST; length=918bp
CGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTATTTCCCGGCCG
AAACAAGCAGATGATGGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTC
CTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTTTCTCTGAGAGTTTAT
ATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAAAAAATGAGCGCAT
CAAGGTTTATTAAGTGCGTGACGGTAGGCGATGGAGCTGTGGGTAAAACT
TGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTACGGATTATGTGCC
AACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCACGG
TTAATCTTGGATTATGGGATACTGCTGGACAAGAGGATTATAACAGATTA
AGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCT
TATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGT
TGAAACATTATGCACCTGGTGTGCCAATAATTCTTGTTGGAACAAAGCTT
GATCTTCGGGATGATAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCC
CATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGTTGATTGGTGCACCTG
CTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTT
GATGCAGCCATCAAGTTTGCCCTCCAACCCCCAAAGACGAAAAAAAAAAA
GAATAAACCACAAAAGGCCGGCTCTATATTGTGATTGAAATTAGGTGTAA
AAAAATTATGAACCTCTGTCCTTTCTCAATTCCCCCCTCATCTTTCTTCC
TTTGGTCTGGAAAAAAATTCCATTTGACAAACTGGGGAGGATCCCCCCGG
GAAAACCTCAGGGGGTTT
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