DY271440

Overview
NameDY271440
Unique NameDY271440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.659e-45
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A + ALQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.242e-45
Identity = 90/174 (51.72%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D     D       P+   +G  + + I A AY+ECS+K+++ V+ VF+ A + ALQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.152e-45
Identity = 86/173 (49.71%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  203 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIK 715
            R +K   VGDG VGKTC+LI+YT N FP +Y+PTVFDN + N+ V+    NL LWDTAGQEDY RLRPLSY   + F+L +S+ S+ S+ENV  KW PE++H++  VP++LVGTKLDLR  + ++F         ++T +G+++RK I A   +ECS+K +QN++ VF+ A++
Sbjct:   10 RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF---------VTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVR 173          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO1_KLULA (GTP-binding protein Rho1 OS=Kluyveromyces lactis GN=RHO1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.065e-44
Identity = 94/173 (54.34%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFAL 724
            K V VGDGA GKTCLLI +    FP  YVPTVFDN+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  ++V ++ +S+    S ENV +KWI E+ H+  GVPIILVG K DLR+D Q    +   G  P+S AQ +E+   IGA  YIECS+KT   V+ VF+AA + +L
Sbjct:   14 KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLHFCQGVPIILVGCKADLRNDPQVVEELRAQGLQPVSQAQAQEVADQIGAVDYIECSAKTGYGVREVFEAATRASL 186          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+  +  +      P+   +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.372e-44
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180          
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.098e-44
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 2
Query:  212 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+    +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A + ALQ
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 180          
The following BLAST results are available for this feature:
BLAST of DY271440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOA_BOVIN3.659e-4551.72Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHO1_DROME6.242e-4551.72Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHOL_DROME8.152e-4549.71Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]
RHO1_KLULA1.065e-4454.34GTP-binding protein Rho1 OS=Kluyveromyces lactis G... [more]
RHOC_PONAB2.372e-4450.57Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE2.372e-4450.57Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN2.372e-4450.57Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_CHICK2.372e-4450.57Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOC_BOVIN2.372e-4450.57Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOB_RAT3.098e-4451.15Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271440 ID=DY271440; Name=DY271440; organism=Citrus clementina; type=EST; length=918bp
CGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTATTTCCCGGCCG
AAACAAGCAGATGATGGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTC
CTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTTTCTCTGAGAGTTTAT
ATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAAAAAATGAGCGCAT
CAAGGTTTATTAAGTGCGTGACGGTAGGCGATGGAGCTGTGGGTAAAACT
TGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTACGGATTATGTGCC
AACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCACGG
TTAATCTTGGATTATGGGATACTGCTGGACAAGAGGATTATAACAGATTA
AGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCT
TATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGT
TGAAACATTATGCACCTGGTGTGCCAATAATTCTTGTTGGAACAAAGCTT
GATCTTCGGGATGATAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCC
CATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGTTGATTGGTGCACCTG
CTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTT
GATGCAGCCATCAAGTTTGCCCTCCAACCCCCAAAGACGAAAAAAAAAAA
GAATAAACCACAAAAGGCCGGCTCTATATTGTGATTGAAATTAGGTGTAA
AAAAATTATGAACCTCTGTCCTTTCTCAATTCCCCCCTCATCTTTCTTCC
TTTGGTCTGGAAAAAAATTCCATTTGACAAACTGGGGAGGATCCCCCCGG
GAAAACCTCAGGGGGTTT
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