DY304300

Overview
NameDY304300
Unique NameDY304300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1275
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.301e-24
Identity = 88/264 (33.33%), Postives = 122/264 (46.21%), Query Frame = 3
Query:   84 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 776
            AA  R   +K+ FL+G  G+      L+ ++++ + ++    +   G             +P+YLNG  PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K +G+    P W+ AG         +Y        + S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+ DP  N
Sbjct:    7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND--------------LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVAN 255          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.604e-24
Identity = 90/263 (34.22%), Postives = 127/263 (48.29%), Query Frame = 3
Query:   15 TTPALRGS*LSSGNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 734
            T+P L G   SS ++  V ++  A V           + +S KL    A      S    V+  G +L     P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P S + +         + +S    E GYPGG  F+PL+ A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:   15 TSPFLSGGKKSSQSLLFVNSKVGAGV-----------STTSRKLVVVAAAAAPKKSWIPAVKGGGNFL----DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTP 255          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.638e-23
Identity = 92/314 (29.30%), Postives = 128/314 (40.76%), Query Frame = 3
Query:   57 MATVTTQASAA------VFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 803
            MA  +T A+A+      V    +S S   T   G   ++ + K     A   +  +  W PG  SP YL+GSL GD GFDP GL +  E L++                                           + + EL++ RWAML  +G +  E  T +       W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A     K +    E+ + RLAM+ FLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:    1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPK----KAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.139e-23
Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  231 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 776
            +P+YLNG  PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K   ++   P W+ AG         +Y        + S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A  PT   E K KE+ NGRLAM +  GF VQ  VTGKGP ENLL H+ +P  N
Sbjct:   63 TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND--------------LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 252          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.794e-23
Identity = 81/256 (31.64%), Postives = 108/256 (42.19%), Query Frame = 3
Query:  213 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV-------------------------------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 803
            W PG  SP +L+GSL GD GFDP GL +  E L++ +                                           + EL++ RWAML  +G L  E  T +       W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A   E   +    E+ + RLAM+AFLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:   58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.649e-23
Identity = 87/257 (33.85%), Postives = 123/257 (47.86%), Query Frame = 3
Query:   81 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 734
            SAAV    +S   FLTG  G  ++ +   P+++                 AK  W+P       L  P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  TL   + IL  +VE +RW D  +P S + +         + ++    E GYPGG  F+PL  A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:    5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTP 250          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.225e-23
Identity = 83/243 (34.16%), Postives = 112/243 (46.09%), Query Frame = 3
Query:  129 GSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 776
            G +GK  ++ A K VS S+S     +  +A   W      P    G  PGD G+D  GL+ DPE  K Y + EL+++R  +LG +GM+ PE+      I   +   W+ AG A        Y  + S +          ++ +L   VE  R      P     DP+            YPG  F+PL  A       E K KE+ NGRLAM A LGF VQ  VTGKGP ENL  H+++P  N
Sbjct:   34 GRAGKSTKKGA-KAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAEN 261          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.035e-22
Identity = 71/195 (36.41%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  213 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 794
            W P   +P++LNG   GD GFDP GLA DP+  +    AE+ + R AML VVG L+P+   K GI     WY+A + A        +F   + +F         ++      N DP             YPG  F+PLN   TD  KE E+ NGRLA+ A LGF VQ +V G  P  NL +H+  P    I  ++
Sbjct:    5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDP----------TTIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 171          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.270e-22
Identity = 86/259 (33.20%), Postives = 125/259 (48.26%), Query Frame = 3
Query:   66 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 734
            +TT ++ AV    +S   FLTG   +   L   V  +  +      A+  V  K  W+P + S      P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  +L   + +L  +VE +RW D  +  S + D         + ++    E GYPGG  F+PL  A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:    1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTP 250          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.609e-21
Identity = 78/231 (33.77%), Postives = 110/231 (47.62%), Query Frame = 3
Query:  150 REVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 776
            R+ A K VSS + +    + ++L   +  +P+YL G   G        L+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   35 RKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243          
The following BLAST results are available for this feature:
BLAST of DY304300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB23_HORVU3.301e-2433.33Chlorophyll a-b binding protein of LHCII type III,... [more]
CB4_SPIOL9.604e-2434.22Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_ARATH1.638e-2329.30Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB23_SOLLC2.139e-2338.73Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB4A_ARATH2.794e-2331.64Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4A_SOLLC3.649e-2333.85Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB2_DUNSA6.225e-2334.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
LH18_EUGGR4.035e-2236.41Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4B_SOLLC5.270e-2233.20Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB22_SOYBN7.609e-2133.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YF03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304300 ID=DY304300; Name=DY304300; organism=Citrus clementina; type=EST; length=1275bp
CTTCTTCCACCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCG
GGAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCC
ATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATA
GGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAA
GCCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGG
CAGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATC
CTGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGG
GCCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGAT
TGGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACT
TTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTAT
GTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCA
AGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACC
CCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGATGAGGCAAAG
GAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATT
TATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGC
AACATATCTCTGACCCATGGCACAACACCATCGTCCAGACACTTAGTGGT
AATTAATCAAAGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGT
ACCCTGAATCTGTAGTTTTTGATTGAGATTTGAGCATCAATGTAAACATG
GAAACCCCTCATGGTAAGGGGAACTATGATTGGATTTAAATTATCATTTT
ACACCAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCTCTAAAATA
TTCCTTCAAGGGGCCCCAACCTTACCCCTTACCCCGCCTTTCCTTGGAAA
AAATTGGTCCCCTTAAATTGAATTCTTAATTAAAAACTTAAGGCACCTGG
CCCCTCCTTTTTACAAACCTTCGGTAACCGGGAAAAAACTCGCTCACCTT
TGGGGAAACTTTTTGGTAAAAAGAAAACTATAACTTTTCCTGTGGGGTGT
GGGTAAAAAAAATTTTGTGAAACAAAACAACCACCCCCATAAAACAAAAA
AAAATTTTTTATAAAAAAAGCCTCC
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