DY304395

Overview
NameDY304395
Unique NameDY304395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EI3EB_XENLA (Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus laevis GN=eif3e-B PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.046e-50
Identity = 99/209 (47.37%), Postives = 151/209 (72.25%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL+ TNMVD+AMD++K+LY  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  ++ R  LS+LWGK+A+EILMQNWD A+E+L  L+E ID+  + +SPL++
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSDTNMVDFAMDVYKNLYADKEIPLALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDHLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NTVSSPLQS 208          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 3.491e-50
Identity = 97/209 (46.41%), Postives = 150/209 (71.77%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL++TNMVD+AMD+HK+L+  +++P  + E+R+ VV +LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  L++LWGK+A+EILMQNW+ A+E+L  L E ID+  S +SPL++
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSETNMVDFAMDVHKNLFPEKEIPATLREKRITVVGQLKQLQGETEPIVKMFEDPETTKQMQSTRDGQALFNYLAEKHSFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALNSLWGKLASEILMQNWEAAMEDLTRLRETIDN-NSVSSPLQS 208          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_CHICK (Eukaryotic translation initiation factor 3 subunit E OS=Gallus gallus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.559e-50
Identity = 99/209 (47.37%), Postives = 152/209 (72.73%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  LS+LWGK+A+E+LMQNWD A+E+L  L+E ID+  S +SPL++
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDEIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEVLMQNWDAAMEDLTRLKETIDN-NSVSSPLQS 207          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EI3EA_DANRE (Eukaryotic translation initiation factor 3 subunit E-A OS=Danio rerio GN=eif3ea PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.955e-49
Identity = 96/209 (45.93%), Postives = 148/209 (70.81%), Query Frame = 3
Query:   87 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPLKT 707
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y + ++L  K++LL+ TNMVD+AMD++++L+  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   + R  L++LWGK+A+EILMQNW+ A+E+L  L E ID+  + +SPL++
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEHELLHGKLDLLSDTNMVDFAMDVYRNLFPDKEIPNSLREKRTTVVAQLKQLQSETEPIVKVFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALNSLWGKLASEILMQNWEAAMEDLTRLRETIDN-NTVSSPLQS 208          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_SCHPO (Eukaryotic translation initiation factor 3 subunit E OS=Schizosaccharomyces pombe GN=int6 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.329e-41
Identity = 89/196 (45.41%), Postives = 125/196 (63.78%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLY--HT-EDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKID 674
            YDL+Q+I  +LDRHL+FPLLEFL  RQ +  +++L++K +LL  TNM DY  ++  +L+  HT ED+     E+R  V+  L  LEE    I+  L+NP+    LR  D+  NLQ L + Y I P++I  LY++A+FQ+ CGNY GA+D LY +RA   +     SA WGK A+EIL  +WD A+EEL  L E +D
Sbjct:   15 YDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR-QDKGQNLQHLQEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELNASATWGKFASEILTVDWDGAMEELGKLREMVD 209          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_COCIM (Eukaryotic translation initiation factor 3 subunit E OS=Coccidioides immitis GN=INT6 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.920e-40
Identity = 86/204 (42.16%), Postives = 131/204 (64.22%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFL--QERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPL 701
            YDL  ++ P LDRHLVFPLLEF   QE      ++I KSK ELL +TNM DY  ++ + + H++ +P++ V++R EVV RL+   E ++ I   LQ+ N   +LR+ D+  NL+ L +++    D +  LY Y +FQ+ CG+Y  AA+ LYQ+R L T++ +  SA WGK+A+EIL  NW+ A+EE+  +++ I D   F +PL
Sbjct:   22 YDLLPKLIPYLDRHLVFPLLEFASGQEETQESIDEITKSKYELLKQTNMTDYVANLWQEINHSDTIPEEFVKKREEVVQRLQQYVEDSSKITELLQDDNVVGNLRS-DKVANLKFLEEQHGATVDMVNTLYDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKLASEILTTNWEGAMEEVQKVKDSI-DTRLFNNPL 223          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_BOMMO (Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori GN=eIF3-S6 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.176e-39
Identity = 79/198 (39.90%), Postives = 131/198 (66.16%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPN---SFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRR-LSALWGKMAAEILMQNWDIALEELNHLEEKIDD 677
            +DLT +I   LDRHLVFPLLEFL  ++ Y   ++L++K+E+L+KTNM+DY  DI + LY  ED P+++++RR  V++ L+ L++   P++  +Q  +   + + +R      N    +  Y+   + I+++Y+ AK+++ECGNY  +A YLY  + + + + +  LS LWGK+A+EIL+QNWD AL++L  L E ID+
Sbjct:    6 FDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGALDDLTKLREFIDN 203          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPOR (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus oryzae GN=int6 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.066e-39
Identity = 79/202 (39.11%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPL 701
            YDL  ++ P LDRHLVFPLLEF   +    D++I+++K ELL  TNM DY  ++ + + +++ +P + V++R EV+A+L+  +E +A I   LQ+ +   +LR+ D+  NL+ L +++ + P+ + +L+ Y +FQ+ CG+Y  AA+ LYQ+R L T++ +  SA WGK+A+EIL  +W+ A+EE+   +E I +   F +PL
Sbjct:   31 YDLLPKLIPFLDRHLVFPLLEFSSGQD--DDKEIVRAKYELLKHTNMTDYVANLWQEINNSDTIPDEFVKKREEVLAKLQHYQEESAKITELLQDEDVVGNLRS-DKVANLKFLEEQHGVTPEMVNSLFDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKLASEILTTSWEAAMEEVQKAKESI-ETRLFNNPL 228          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPFU (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus fumigatus GN=int6 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.066e-39
Identity = 79/202 (39.11%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPL 701
            Y+L  ++ P LDRHLVFPLLEF   +    +++I+++K ELL  TNM DY  ++ K + +++D+P + V++R EV+A+L+  EE +A I   LQ+ +   +LR+ D+  NL+ L +++ +  + + +LY Y +FQ+ CG+Y  AA+ LYQ+R L T++ +  SA WGK A+EIL  +W+ A+EE+  +++ I +   F +PL
Sbjct:   31 YNLLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSDDIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRS-DKVANLKFLEEQHGVTVEMVNSLYDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKFASEILTTSWEAAMEEVQKVKDSI-ETRLFNNPL 228          
BLAST of DY304395 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPFC (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=int6 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.066e-39
Identity = 79/202 (39.11%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   96 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSVRRLSALWGKMAAEILMQNWDIALEELNHLEEKIDDPESFTSPL 701
            Y+L  ++ P LDRHLVFPLLEF   +    +++I+++K ELL  TNM DY  ++ K + +++D+P + V++R EV+A+L+  EE +A I   LQ+ +   +LR+ D+  NL+ L +++ +  + + +LY Y +FQ+ CG+Y  AA+ LYQ+R L T++ +  SA WGK A+EIL  +W+ A+EE+  +++ I +   F +PL
Sbjct:   31 YNLLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSDDIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRS-DKVANLKFLEEQHGVTVEMVNSLYDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGKFASEILTTSWEAAMEEVQKVKDSI-ETRLFNNPL 228          
The following BLAST results are available for this feature:
BLAST of DY304395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EI3EB_XENLA2.046e-5047.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SALSA3.491e-5046.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CHICK4.559e-5047.37Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_DANRE2.955e-4945.93Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SCHPO1.329e-4145.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_COCIM1.920e-4042.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOMMO6.176e-3939.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPOR8.066e-3939.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPFU8.066e-3939.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPFC8.066e-3939.11Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304395 ID=DY304395; Name=DY304395; organism=Citrus clementina; type=EST; length=1271bp
CGCTCATCCTCAGTTTGCTCTTCGTCTACAGCAGAACAGTAGCAGCATAC
GCCGCTGCCGCCGACGAACAAAATTTGAACGCGACAATGGCGACGTACGA
TTTGACGCAGAGAATCGCTCCGAATCTGGACCGGCATCTGGTGTTTCCGC
TGCTGGAGTTTCTTCAAGAGCGGCAGATGTACCCGGACGAGCAGATTTTG
AAATCGAAGATAGAGCTCTTGAACAAGACGAACATGGTCGACTACGCGAT
GGACATCCACAAGAGCCTCTACCACACCGAAGACGTCCCGCAGGATATGG
TCGAGCGGAGGGTCGAGGTCGTCGCTCGGTTGAAGGCCCTGGAGGAGCGC
GCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTAACTCCTTTCAAGATTT
GAGAGCTAATGACCAGCACTACAATTTGCAGATGCTTCACGACCGTTACC
AGATTGGCCCGGACCAGATCGAGGCGCTTTATCAGTATGCCAAATTTCAG
TTTGAATGTGGGAACTACTCTGGGGCTGCTGACTATCTGTACCAGTACAG
GGCCTTGTGCACTAACAGTGTAAGGAGGCTGAGTGCATTATGGGGAAAAA
TGGCGGCTGAAATATTGATGCAGAATTGGGATATTGCTCTTGAAGAACTT
AATCACTTAGAGGAAAAAATTGATGACCCAGAGAGTTTCACATCACCTTT
AAAAACAAATTGAAAGTAGGATATGGCTTATGCAATTGGAGGTCTCTTAT
TCTGTTTCAGTCCTGATGATGGTAAAAACCGAAACCAAGCATAGTTCACT
CCGGAGGACTATCTAATGGCCGATAATTCCCTGGTCGCCAATCGTACACC
ATGCAACCAACTTGCCCACTTTGGCCACACTAGGGGAAAACGACTTTCCA
CGTATTTTGGAAAGGGTCTTCAACGACTTACTCTGATTTTTCCCAGATCC
CCATCAGCGTAAAATAATGGCACACGTATACGGCGAATCAGCACTCTCCC
GACGGGGACAACGCAAGATTAGAGGGGCGCCTCCATAGGGGAGACGTCGG
GTTTGCTGGTATATGGCGAGTGGGTACGAAATGGGGTGGTGAGGCGTAGA
AGAACTCAAGGACTTTTAAACCACCACGTCTTTCCTGTTGTGCTTCAGTG
ATTGCAATATTGCTCACTCTTGAAACCTCACACGTAACCTACGCCACGCA
TATAAAAGGTAGTAACTTAGTATGGATTTTACGTAATGGCGCTAATGTCA
TCCTTATTATTCGACGCCTTC
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