DY304403

Overview
NameDY304403
Unique NameDY304403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.955e-49
Identity = 97/190 (51.05%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  159 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQV----KKRKKPRCSLL 716
            K V+VGDGA GKTC+LI ++ + FP  Y+PTVF+NY A++ +DGK   L LWDTAGQE+YDRLRPLSYP TDV L+CFS+ S  S EN+  KW  EV H  P VPI+LVG K+D+RND  +I +L++   E V  ++G   A++INA  YLE SA ++ GV+ VF+   R+ +      KK KK  C+++
Sbjct:    5 KCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDIRNDNDSIKKLKERNIELVPYEKGLEKAKEINAI-YLEASALTQRGVKNVFDQCIRSVIYPNKLNKKPKKKTCTIM 193          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.915e-48
Identity = 106/230 (46.09%), Postives = 140/230 (60.87%), Query Frame = 3
Query:  111 CCSSSANSEPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINEL--RKMKQEP-------------------VKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL-------QVKKRKKPRCSLL 716
            C S+S +++P   I +K+VI+GDGACGKT LL VF++  FPEVY PTVFENY+ DI VD K + L+LWDTAGQE++DRLR LSY DT  I++CFS+DS DSLEN+  KW  E+   C  V ++LV  K DLRN+    N +    ++Q+                    +  +EG AMA+KI A  YLECSAK  +GV E F  A R AL       +VK      C+++
Sbjct:    5 CGSASTSNKP---IERKIVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGVNEAFTEAARVALTAGPVATEVKSDSGSSCTIM 231          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.915e-48
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  147 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPRCSLL 716
            A+R+KLVI+GDGACGKT LL VF+  +FPE Y PTVFENYV D  VDG +V L LWDTAGQE+Y+RLRP SY   D+IL+ F+VD+ +SL N   KW  E   +CP  PI+LVG KKDLR + A   E      E V  ++ + +A  I A  Y+ECSA + EGV +VFE ATR +L +KK     C ++
Sbjct:    5 AVRRKLVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQE-AHFKE--NATDEMVPIEDAKQVARAIGAKKYMECSALTGEGVDDVFEVATRTSLLMKKEPGANCCII 191          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RND2_MOUSE (Rho-related GTP-binding protein RhoN OS=Mus musculus GN=Rnd2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.267e-48
Identity = 86/176 (48.86%), Postives = 127/176 (72.16%), Query Frame = 3
Query:  153 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKE-GVREVFETATRAAL 677
            R K+V+VGD  CGKT LL VF+KD +P  YVPTVFENY A  E+D +++EL +WDT+G   YD +RPL+YPD+D +L+CF +  P++L+++ +KW  E + FCP+  ++LVG K D+R D AT+ EL K +  PV  ++G  +A+++ A +Y+ECS++S E  VR+VF  AT A+L
Sbjct:    7 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASL 182          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RND2_HUMAN (Rho-related GTP-binding protein RhoN OS=Homo sapiens GN=RND2 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 3.267e-48
Identity = 86/176 (48.86%), Postives = 127/176 (72.16%), Query Frame = 3
Query:  153 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKE-GVREVFETATRAAL 677
            R K+V+VGD  CGKT LL VF+KD +P  YVPTVFENY A  E+D +++EL +WDT+G   YD +RPL+YPD+D +L+CF +  P++L+++ +KW  E + FCP+  ++LVG K D+R D AT+ EL K +  PV  ++G  +A+++ A +Y+ECS++S E  VR+VF  AT A+L
Sbjct:    7 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASL 182          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.621e-47
Identity = 93/190 (48.95%), Postives = 126/190 (66.32%), Query Frame = 3
Query:  159 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL----QVKKRKKPRCSLL 716
            K+VIVGDG CGKT LL+V+ +  FPE Y P+VFE Y A + V  K+V L L+DTAGQEDYDRLRPLSY +T ++L+C+ V +P S +N+  KW PEV HFC  +P +L+G K DLR D   + +LR  + EP+   +G    E++    YLECSAK +E V +VF  A + AL    + +++KK R  LL
Sbjct:   21 KIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGLNACEQMRGALYLECSAKFRENVEDVFREAAKVALSALKKAQRQKKHRICLL 210          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 2.118e-47
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  159 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAA 674
            K+V+VGDGA GKT LLI+++   FP+ YVPTVF+N+      D K V L LWDTAGQEDYD LRPLSYP TDV ++C+SV   DSL+NI  KW PE+       PIILVG K DLR D  T+++L++ KQEPV   EG A+A++I A  + ECSA +  GV ++F  A +AA
Sbjct:   10 KVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFECSALTGNGVNDIFAAAIKAA 181          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.766e-47
Identity = 102/202 (50.50%), Postives = 128/202 (63.37%), Query Frame = 3
Query:  111 CCSSSANSEPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINE-------LRKMKQEP------VKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 677
            C SSS++  P   I +K+VI+GDGACGKT LL VF++  FP+VY PTVFENY+ DI VD + + L+LWDTAGQE++DRLR LSY DT  I++CFSVDS DSLEN+  KW  E+   C  V ++LV  K DLR+     NE       ++  K         +   EG AMA++I A  YLECSAK   GV E F  A R AL
Sbjct:    4 CGSSSSSKHP---IERKIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGVNEAFTEAARCAL 202          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.612e-47
Identity = 97/192 (50.52%), Postives = 128/192 (66.67%), Query Frame = 3
Query:  159 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKRKKPR------CSLL 716
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D      +      P+   +G  + + INA AY+ECS+KS++ V+ VF+ A R  LQ  K+KK +      CS+L
Sbjct:    8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--VDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of DY304403 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 6.161e-47
Identity = 92/174 (52.87%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  159 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPSVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 677
            K+V+VGDGA GKTCLLI + +  FP  Y+PT+FENYV +IE  +G+ +ELALWDTAGQE+Y RLRPLSY + DV+++C+SV S  SL+N+ + W PEVKHFCPS PI+LVG K DL  +   +++L       V+P    ++A+++ AFA+++CSA+ KE + EVFETA    L
Sbjct:   74 KIVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFCPSTPIMLVGLKSDL-YEADNLSDL-------VEPSSAESLAKRLGAFAHIQCSARLKENIDEVFETAIHTLL 239          
The following BLAST results are available for this feature:
BLAST of DY304403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACF2_DICDI2.955e-4951.05Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RHO3_YEAST1.915e-4846.09GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RHO2_YEAST1.915e-4852.63GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RND2_MOUSE3.267e-4848.86Rho-related GTP-binding protein RhoN OS=Mus muscul... [more]
RND2_HUMAN3.267e-4848.86Rho-related GTP-binding protein RhoN OS=Homo sapie... [more]
RHOF_MOUSE1.621e-4748.95Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]
RACD_DICDI2.118e-4754.07Rho-related protein racD OS=Dictyostelium discoide... [more]
RHO3_ASHGO2.766e-4750.50GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RHO1_PEA3.612e-4750.52Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RHO4_YEAST6.161e-4752.87GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YJ17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304403 ID=DY304403; Name=DY304403; organism=Citrus clementina; type=EST; length=1271bp
ATTGAATATTGTCGATAAGCCAAAAAATCTACAGAAATTAGCCAGAATCT
TCAGGTATCTACAAAATATAATAAATAACAACCCTCGCATGTGAGGGTAC
TATGTGGTGGTGCTGTTCTTCTTCCGCTAATTCAGAACCGATGGCTGCGA
TACGTAAAAAATTAGTGATCGTCGGGGACGGTGCTTGCGGTAAAACATGC
CTCCTAATCGTGTTCAGTAAGGATCAGTTTCCGGAAGTGTACGTGCCGAC
AGTATTCGAAAATTACGTCGCCGACATAGAAGTTGACGGTAAGCAAGTAG
AGCTCGCATTATGGGACACAGCCGGTCAAGAAGATTACGACCGGCTGCGG
CCACTATCCTACCCCGACACGGACGTGATACTTATGTGTTTCTCCGTGGA
CTCGCCGGATTCGCTGGAGAACATACCTGAGAAGTGGACTCCCGAGGTGA
AACACTTCTGCCCCAGTGTTCCTATCATCCTGGTAGGCAATAAAAAGGAT
TTGCGCAACGACCCAGCTACGATTAACGAGCTGCGTAAGATGAAGCAGGA
GCCTGTGAAGCCGCAGGAAGGGCGCGCGATGGCCGAGAAGATCAATGCCT
TCGCCTACTTGGAGTGCTCGGCCAAGAGCAAGGAGGGCGTGCGCGAGGTG
TTTGAGACGGCGACCCGTGCTGCATTACAAGTCAAGAAGAGGAAGAAGCC
CAGGTGTTCTTTGCTGTAATTGTGCTGTTTTCGGGAGGACTCTGATTTAT
AAATCGTTCGCATACTGCCTGAACACTTACGTTTAAAACGACTCGGGCTC
TGCATCAATCGCGACGTCGGCCACACAGTGCTTCCTTCCGATACTGACAG
CCGACGTGCTGTTCGGCCCGTGTTGCACCCACCCCACTCAATTATTCTGT
GGGTACACTTTTCCATTTGGTACTTGTATATTTTATAGAAAATCTATAAA
CCATTAAGCGTAAATTGCCCTAAACAATGTACTCCGGGGGGTGAACCGGA
ACCCCCCCCCAGGTTCCCCAAAAAATTTTTTGTGCCAAAACAATCCAGGT
AATTAATAATCAAATATCCAATTTTTTTCAAAAATAAAAAAAATATCCCC
CCAAAAGGGTTTCCCCCCCACCCAAAAAACCCCCCTTTTTTTAATTTTTT
TTTAATTTTTGAATTTTTTATATTTTTTCTCCAATAAAAAAAAATTTTTA
ATATATTAAAATATTTTTTGTTTAAAGAAAATATGTTGTTTATAATTTTT
TTTTATACACCACAAAAAAAA
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