DY304496

Overview
NameDY304496
Unique NameDY304496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: GUDP_BACSU (Probable glucarate transporter OS=Bacillus subtilis GN=gudP PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.851e-20
Identity = 56/208 (26.92%), Postives = 93/208 (44.71%), Query Frame = 3
Query:  261 DSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 872
            D  S+ P  ++   RWFIV + F    +   DR  +SI    +  +   +   +G + S+F W Y++ Q+ GG   D  G K ++   + +WS  T L       +A   +  L  +R  +G+ E  + P    +++ W P +ER  + A   S  Y   V       +L H FGW SVF   G  G +   +WL   +  P + P++
Sbjct:    4 DFASVTPAGKKTSVRWFIVFMLFLVTSINYADRATLSITGDSVQHDLGLDSVAMGYVFSAFGWAYVIGQLPGGWLLDRFGSKTIIALSIFFWSFFTLLQGAIGFFSAGTAIILLFALRFLVGLSEAPSFPGNGRVVASWFPSSERGTASAFFNSAQYFAIVIFSPLMGWLTHSFGWHSVFVVMGIAGILLAVIWLKTVY-EPKKHPKV 210          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: EXUT_BACSU (Hexuronate transporter OS=Bacillus subtilis GN=exuT PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.149e-19
Identity = 65/239 (27.20%), Postives = 105/239 (43.93%), Query Frame = 3
Query:  312 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPCKKKPNCSSCASQGTVKTIPLGNYPGQNPPVWALYSF------LPFFTTW 1010
            +++  F A ++  +DR  +SIA   +  +   +   +GLI SSF  GY +    GG+ +D  G K  L   +V WS+ +    VA   G   LL++R+  G+GEG     +N +++ W P  +R+  + +  SG  LG          +   F W   F     +G +W  +W       P E       K+ P   +  S G  + IPL  Y  Q   ++  ++F      L FF TW
Sbjct:    9 VILFLFLAGVINYLDRSALSIAAPFIQDDLTLSATQMGLIFSSFSIGYAIFNFLGGVASDRYGAKLTLFVAMVVWSLFSGA--VALAFGFVSLLIIRILFGMGEGPLSATINKMVNNWFPPTQRASVIGVTNSGTPLGGAISGPIVGMIAVAFSWKVSFVLIMIIGLIWAVLWFKFVKEKPQE-----TIKEAPAIKAETSPG--EKIPLTFYLKQKTVLFTAFAFFAYNYILFFFLTW 238          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: NPT1_RAT (Sodium-dependent phosphate transport protein 1 OS=Rattus norvegicus GN=Slc17a1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.541e-18
Identity = 52/172 (30.23%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  402 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPCKKKPNCSSCASQ 917
            +W+    GL+ SS F G ++ Q+  G  +     + ++G  +   S+ + L P AA++G   ++V RV  GI +G      + I  KW P  ER R  ++  SG  +G    L  S F+    GWP VFY FG +G V    W       P   P +   +K    SS   Q
Sbjct:   72 SWSLDIQGLVLSSVFLGMVVIQVPVGYLSGAYPMEKIIGSSLFLSSVLSLLIPPAAQVGAALVIVCRVLQGIAQGAVSTGQHGIWVKWAPPLERGRLTSMTLSGFVMGPFIALLVSGFICDLLGWPMVFYIFGIVGCVLSLFWFILLFDDPNNHPYMSSSEKDYITSSLMQQ 243          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: GARP_ECOLI (Probable galactarate transporter OS=Escherichia coli (strain K12) GN=garP PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.725e-17
Identity = 55/194 (28.35%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  303 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF----LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 872
            R+ I+++ F    +   DR  +SIA   ++ E   +  ++G I S+F W YLL QI GG   D  G K V  + + +WS+ T L        L +    +  +R  +G  E  + PA   I++ W P  ER  + A+  S  Y           +L   +GW  VF   G +G V   +W+   H +P + P++
Sbjct:   16 RYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIH-NPTDHPRM 208          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: GARP_ECO57 (Probable galactarate transporter OS=Escherichia coli O157:H7 GN=garP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.725e-17
Identity = 55/194 (28.35%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  303 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF----LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 872
            R+ I+++ F    +   DR  +SIA   ++ E   +  ++G I S+F W YLL QI GG   D  G K V  + + +WS+ T L        L +    +  +R  +G  E  + PA   I++ W P  ER  + A+  S  Y           +L   +GW  VF   G +G V   +W+   H +P + P++
Sbjct:   16 RYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIH-NPTDHPRM 208          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: YKH4_CAEEL (Uncharacterized transporter C02C2.4 OS=Caenorhabditis elegans GN=C02C2.4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.943e-17
Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 3
Query:  351 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP-VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF-SPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 860
            MD       ++    E  WN     LI S  FWG L+T +    + +    + VL   V  + + T +TP +A   G   + + R+ MG+GEG   P  N I+  W P +E+S +L++   G  + S  G    +       GWP+ FY  G   T W  +W   A S PA+
Sbjct:   82 MDEDGQKKVVVDYGGELVWNSYEQNLIFSGTFWGSLITVLPSMFFIERFSPRHVLQISVALYILVTVITPFLATHFGYFSVFLARIGMGLGEGFVFPTNNAIIGNWFPSSEKSTALSIFTLGNQIASAAGSPMVAAVCASDLGWPATFYFAGIFATGWSILWFFTASSHPAK 253          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: YYBO_BACSU (Uncharacterized transporter yybO OS=Bacillus subtilis GN=yybO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 62/230 (26.96%), Postives = 97/230 (42.17%), Query Frame = 3
Query:  303 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPCK----KKPNCSSCASQGTVKTIPLGNYPGQNPPVWAL 980
            RW+I  L     +L   DRV +S+A   +   F+     +G++ S + + Y L Q+  G   D  G   V   G+  WS  T L  +A   G   L + R  +G+    A PA +   + W P +ER  + +L  S     +V G     FL+  F W   F + G +  V FT++  + +  P    ++   +    +K N  +   Q   KT PL      N  VW L
Sbjct:   20 RWYISSLLSGIIILNYFDRVAISVAAPAIQDSFHLTATELGIVFSIYTYSYTLMQLPVGSLLDRFGVAWVTRVGMTIWSFLTIL--LAFLQGKLLLYLFRFLIGLTSASAFPAASKATALWFPPSERGLANSLFDSAAKFSNVIGAPLVAFLVTTFDWRVAFLTIGCI-NVLFTIFFWQYYEQPERHKRISKSELNYIQKHNAIT-TEQIPYKTGPLLKKLFTNRKVWGL 245          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: GUDP_PSEPU (Probable glucarate transporter OS=Pseudomonas putida GN=gudP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.744e-13
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  303 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP----FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS 728
            R+ I+++ F    +   DR  +SIA   +  +F  +  T+G I S+F W Y+L QI GG   D  G K V    +  WS+ T L     + G+      L ++R  +G+ E  + P    I++ W P  ER  + A+  S  Y  +
Sbjct:   10 RYLILLMLFLVTTINYADRATISIAGSSIQKDFGLDAVTLGYIFSAFGWAYVLGQIPGGWLLDRFGSKKVYAGSIFTWSLFTLLQGYIGEFGISTAVVLLFLLRFMVGLAEAPSFPGNARIVASWFPTKERGTASAIFNSAQYFAT 155          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: YJJL_ECOLI (Inner membrane transport protein yjjL OS=Escherichia coli (strain K12) GN=yjjL PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.723e-12
Identity = 44/181 (24.31%), Postives = 85/181 (46.96%), Query Frame = 3
Query:  315 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV----WFTVWLSKAH 845
            ++L F A ++  +DR ++S+A L +  E   +   +G + S F   Y + Q+  G   D  G + +LG G+ +WS+  A++ +         ++VR+ MGIGE    P    +++ W  + ER R +    +   +G          ++   GW  +F + G LG      W+ ++ ++ H
Sbjct:   44 MLLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRLMLGLGMFFWSLFQAMSGMVH--NFTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFITIGVLGIFLAIGWYMLYRNREH 222          
BLAST of DY304496 vs. ExPASy Swiss-Prot
Match: PCAK_PSEAE (4-hydroxybenzoate transporter OS=Pseudomonas aeruginosa GN=pcaK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.294e-12
Identity = 53/185 (28.65%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  297 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 851
            P +W IV+LCF    L  +D   M      ++ ++  + A++G + S+   G +   +  G  AD  G K VL   V  + + +  +  A    +  LL +R   G+G G AMP    +LS++ P   +S  +  ++ G  LG   G   S  LI  FGW S+    G L  V   V L +   S
Sbjct:   25 PYQWRIVLLCFLIVFLDGLDTAAMGFIAPALTQDWGIDRASLGPVMSAALIGMVFGALGSGPLADRYGRKLVLVAAVFLFGLFSLAS--AYSTNVEQLLALRFLTGLGLGAAMPNATTLLSEYTPERLKSLLVTSMFCGFNLGMACGGFVSAKLIPLFGWHSLLLLGGLLPLVLAVVLLFRLPES 207          
The following BLAST results are available for this feature:
BLAST of DY304496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUDP_BACSU4.851e-2026.92Probable glucarate transporter OS=Bacillus subtili... [more]
EXUT_BACSU9.149e-1927.20Hexuronate transporter OS=Bacillus subtilis GN=exu... [more]
NPT1_RAT4.541e-1830.23Sodium-dependent phosphate transport protein 1 OS=... [more]
GARP_ECOLI1.725e-1728.35Probable galactarate transporter OS=Escherichia co... [more]
GARP_ECO571.725e-1728.35Probable galactarate transporter OS=Escherichia co... [more]
YKH4_CAEEL2.943e-1729.65Uncharacterized transporter C02C2.4 OS=Caenorhabdi... [more]
YYBO_BACSU2.578e-1326.96Uncharacterized transporter yybO OS=Bacillus subti... [more]
GUDP_PSEPU5.744e-1329.45Probable glucarate transporter OS=Pseudomonas puti... [more]
YJJL_ECOLI3.723e-1224.31Inner membrane transport protein yjjL OS=Escherich... [more]
PCAK_PSEAE8.294e-1228.654-hydroxybenzoate transporter OS=Pseudomonas aerug... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YN22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304496 ID=DY304496; Name=DY304496; organism=Citrus clementina; type=EST; length=1260bp
TGAGCGCGAGAGCTCTCTTTTACTCACCGATTCTACAATCTCCGCCCTAC
ATCTCGGCCCGAAACAAATTGTCGCGAGCGGAACTTCGGCCGCGGGGCCT
GCCTCGGCTTCTACTTGGGGTTCTGTCCGGAGACAGGGTTTGCTCGTTCC
GAGTATCCGTTCGGGATGTGAAGTCCGAGTCGTACAATGTGTCGGAGAAA
TCTGTGAAGTTTGAGGAGGCGTTGAAAGACATCGCGTTGAGGAGTGAGGA
TTTGGGCGTGGATTCGGAGAGCTTGGTTCCCTGGTGGGAGGAGTTCCCCA
AACGTTGGTTTATTGTTGTTTTGTGCTTTTCGGCTTTCTTGCTTTGCAAC
ATGGACAGAGTAAACATGAGCATCGCTATACTTCCCATGTCAGCAGAGTT
TAATTGGAACCCGGCAACCGTTGGTTTGATACAATCTTCCTTTTTCTGGG
GTTACCTTCTTACTCAGATTGCTGGTGGCATATGGGCAGACACTGTTGGT
GGGAAGGCCGTCCTGGGATTTGGTGTAGTTTGGTGGTCCATTGCTACAGC
TCTCACACCAGTTGCTGCTAAACTTGGCCTGCCATTTCTACTTGTTGTTC
GTGTTTTCATGGGGATCGGTGAGGGTGTTGCTATGCCTGCCATGAATAAT
ATTCTGTCCAAATGGGTTCCCGTAGCAGAGAGAAGTAGATCATTAGCTCT
GGTTTACAGTGGGATGTACCTTGGATCGGTTACTGGCCTGGCTTTCTCAC
CTTTTCTGATACATCGATTTGGATGGCCATCAGTCTTTTACTCCTTTGGT
TCTTTGGGGACAGTTTGGTTTACTGTTTGGCTAAGTAAGGCACATAGTTC
ACCTGCTGAGGATCCTCAACTGAGACCCTGCAAGAAAAAGCCTAATTGTT
CAAGCTGTGCATCCCAAGGAACCGTTAAAACAATACCTTTGGGGAACTAT
CCTGGTCAAAACCCCCCTGTATGGGCCCTTTATAGTTTCCTCCCTTTTTT
CACAACTTGGGGGAATTTCTCTTTCTCCTGAACGTGAATGCCACACATAC
ATAAAATCCAGTCCCTGGGATTTCAATTCTTTACCAAAATCCGGGGCCTT
TTTCTGCCTTTTTACCCCCGGGCCTAAACAAGGGCCTTTTTTCTCCCCCA
AACCTCTGGGGGGGGGCCGGGGAAATTGCAAAAAATCCCCCTCTTTGGGA
AGACCCGAGGGGGGGTTTTTAACTCGTTGGTGAAATACCCCCACAACTTT
TTCCTCCCCC
back to top