DY304582

Overview
NameDY304582
Unique NameDY304582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: NOCT_MOUSE (Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 57/214 (26.64%), Postives = 99/214 (46.26%), Query Frame = 3
Query:  297 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHKNQEEYWLVTYTFFKIQTE-GK*N*VKFVFFLQGDKSLPKNGVKSLVVLAGEFNNPPSK 905
            P   R ++D   +  SS     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+  T+I      L+ N     A     + K     + +  T  K +T   +    +    LQ  +++ + G K  +++ G+FN  P++
Sbjct:  121 PRYQRDFVDLRTDCSSSHSPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQV---AIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQ-GAKIPLIVCGDFNAEPTE 329          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.811e-14
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  321 DADPNPISSQERF--SVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 668
            + DP    S+ +F  SV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  153 NVDPKCEDSENKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          

HSP 2 Score: 28.4906 bits (62), Expect = 4.811e-14
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 2
Query:  746 VLVGNIHVL*NPNRGEVKLS*ICFLSSRGQIVA 844
            + V N H+L NP RG++KL+ +  L +    VA
Sbjct:  304 ICVANTHLLYNPRRGDIKLTQLAMLLAEISSVA 336          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: ANGE2_BOVIN (Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.119e-14
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  357 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 668
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYKHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          

HSP 2 Score: 28.8758 bits (63), Expect = 8.119e-14
Identity = 14/36 (38.89%), Postives = 21/36 (58.33%), Query Frame = 2
Query:  737 SRRVLVGNIHVL*NPNRGEVKLS*ICFLSSRGQIVA 844
            S  + V N H+L NP RG++KL+ +  L +    VA
Sbjct:  301 SPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVA 336          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CCR4_USTMA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.049e-13
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  291 PSPDVLRHWIDADPN----------PISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFD-ILNVMEKAGYAGCY-----KRRTGDN----VDGCAMFWKADKFRLLEQTSIEFKEFGLR 686
            P P   R WI  DP+            ++QE F+V+SYNIL D+ A     +Y       + W+ RK  I QE++  + DI C+QEV  ++Y D  L+ + +  Y G +      R   D+    VDGCA+F+K++K++L+E+  +EF +  L+
Sbjct:  272 PLPPPEREWIMIDPDLPDLDADKHANDATQESFNVLSYNILFDRYATAQ--MYGYTPSWALAWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDDERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQ 423          

HSP 2 Score: 24.2534 bits (51), Expect = 1.049e-13
Identity = 11/41 (26.83%), Postives = 21/41 (51.22%), Query Frame = 2
Query:  743 RVLVGNIHVL*NPNRGEVKLS*ICFLSSRGQIVAKKWGKIP 865
            R++V N+H   +P   +VKL  +  L    +    ++ K+P
Sbjct:  457 RIVVANVHTHWDPAFRDVKLVQVAMLMDEVEKAGARFAKLP 497          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.053e-13
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  297 PDVLRHWID------ADPNPISSQER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENV 695
            P++ RHW D      A P+    +++    FSV+SYNIL       +  LY++     + W  R   I +EL   + DI+C+QEV  D Y   I   +E  GY   +KRRTG   DGCA+ +K ++F L+    +E+   G+    R+NV
Sbjct:  169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEYFRRGVPLMDRDNV 318          

HSP 2 Score: 28.1054 bits (61), Expect = 1.053e-13
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  746 VLVGNIHVL*NPNRGEVKLS*ICFL 820
            + V N H+L NP RG++KL+ +  L
Sbjct:  336 ICVANTHLLYNPRRGDIKLAQLAML 360          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: NOCT_HUMAN (Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.829e-13
Identity = 55/214 (25.70%), Postives = 98/214 (45.79%), Query Frame = 3
Query:  297 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHKNQEEYWLVTYTFFKIQTE-GK*N*VKFVFFLQGDKSLPKNGVKSLVVLAGEFNNPPSK 905
            P   R ++D   +  S+     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+   +I      L+ N     A     + K     + +  T  K +T   +    +    LQ  +++ + G K  +++ G+FN  P++
Sbjct:  123 PRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQV---AIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQ-GAKIPLIVCGDFNAEPTE 331          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: ANGE2_MOUSE (Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.576e-13
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  357 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 668
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK +TG   DGCA+ +K  +F LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEF 273          

HSP 2 Score: 28.1054 bits (61), Expect = 6.576e-13
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  737 SRRVLVGNIHVL*NPNRGEVKLS*ICFL 820
            S  + + N H+L NP RG++KL+ +  L
Sbjct:  301 SPSICIANTHLLYNPRRGDIKLTQLAML 328          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CCR4_ASPCL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus clavatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.494e-13
Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 3
Query:  279 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 686
            P   P PD  R W+  D    +S E+ +V+SYN L D +A +    Y   R   + W  R+ LI  EL     DI+C+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  274 PVHLPPPD--RDWVVLDETASASTEKITVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILSELRSHGSDIVCLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQLINFGQTAVR 417          

HSP 2 Score: 21.9422 bits (45), Expect = 8.494e-13
Identity = 13/47 (27.66%), Postives = 21/47 (44.68%), Query Frame = 2
Query:  731 QKSRRVLVGNIHVL*NPNRGEVKLS*ICFLSSRGQIVAKKWGKIPGC 871
            Q   R +V N H+  +P   +VKL     L      +++ + K P C
Sbjct:  447 QTGSRFIVVNAHLYWDPAFKDVKLIQTAILMEEITKLSETYAKWPAC 493          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  261 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDIL-NVMEKAGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 674
            +P  RK       D + H +D D   I S   F+V+SYNIL D +A    DLY       + W  R++ + +E++G   D++C+QEV  D + +I    ++K GY   YKR+T +        +DGCA F++ D+F  +++  +EF +
Sbjct:  221 SPSPRKLIPVNGADGMGH-LDQDAR-IQSAGSFTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNK 364          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  270 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 683
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
The following BLAST results are available for this feature:
BLAST of DY304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NOCT_MOUSE2.560e-1426.64Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3[more]
ANGE2_HUMAN4.811e-1437.19Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 ... [more]
ANGE2_BOVIN8.119e-1439.25Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE... [more]
CCR4_USTMA1.049e-1333.12Glucose-repressible alcohol dehydrogenase transcri... [more]
ANGE2_DANRE1.053e-1334.00Protein angel homolog 2 OS=Danio rerio GN=angel2 P... [more]
NOCT_HUMAN4.829e-1325.70Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2[more]
ANGE2_MOUSE6.576e-1337.38Protein angel homolog 2 OS=Mus musculus GN=Angel2 ... [more]
CCR4_ASPCL8.494e-1333.11Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4B_ARATH1.076e-1232.43Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CNOT6_RAT1.405e-1232.45CCR4-NOT transcription complex subunit 6 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YB19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304582 ID=DY304582; Name=DY304582; organism=Citrus clementina; type=EST; length=923bp
CAAACATTCGGGAGAGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCC
GAAGCCACTTCCTCCTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCAC
CTCCGCGCCGAGCGGCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCT
CCTCCTCCTGCTGCAAGACTACAAACACCATTTCCTGTGGCTTCAATGGT
CCCACCACACATTCCTCATCATCATCGCCGTCAACTCGTTCGTACTGCCG
TCGATGGTACAACCCTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTG
ACGTCCTCCGCCACTGGATCGACGCTGATCCTAATCCAATTTCATCTCAA
GAGAGATTCTCGGTCGTGTCATATAACATATTGGGAGATAAAAATGCTTT
CAAACATAGAGATTTATATCAAAATGTTCGGTATGAATACATGAAATGGA
ACCGTCGCAAAAGGTTAATATGCCAAGAGTTGATTGGATTGAACCCGGAT
ATTATCTGTATGCAAGAGGTGGACAGGTATTTTGATATTCTGAATGTTAT
GGAGAAAGCGGGATATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACG
TTGATGGTTGTGCGATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAG
CAAACAAGCATTGAATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACA
ACTTTCCGCTTTTGAGGCAGATGCGCAACACAAAAATCAAGAAGAGTACT
GGTTGGTAACATACACGTTCTTTAAAATCCAAACCGAGGGGAAGTGAAAT
TAAGTTAAATTTGTTTTCTTTCTTCAAGGGGACAAATCGTTGCCAAAAAA
TGGGGTAAAATCCCTGGTTGTGCTTGCTGGTGAATTCAATAACCCTCCCT
CCAAGTGCAATTTACAAATTTCT
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