DY304582

Overview
NameDY304582
Unique NameDY304582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CCR4_ASPFU (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.524e-11
Identity = 53/156 (33.97%), Postives = 69/156 (44.23%), Query Frame = 3
Query:  264 PLRRKPFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 686
            PL       P PD  R WI  D    SS  R    +V+SYN L D +A +    Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  295 PLTLMAVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKGSKFILLDKQLINFGQTAVR 446          

HSP 2 Score: 21.1718 bits (43), Expect = 5.524e-11
Identity = 13/47 (27.66%), Postives = 21/47 (44.68%), Query Frame = 2
Query:  731 QKSRRVLVGNIHVL*NPNRGEVKLS*ICFLSSRGQIVAKKWGKIPGC 871
            Q   R +V N H+  +P   +VKL     L      +++ + K P C
Sbjct:  476 QTGARFIVVNAHLYWDPAFKDVKLIQTAILMEELTKLSETYAKWPPC 522          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: NOCT_XENLA (Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 3
Query:  342 SSQER-FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGY---------AGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN 692
            S Q R F V+ +NIL      + +D +     E +KW  RK LI +E++   PD++C+QEVD YFD    ++ + GY         + C      +  DGCA+F+  D+F+L+    I      L+ N
Sbjct:   94 SQQPRTFRVMQWNILAQALG-EGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSRLGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFQLVNSAKIRLSARTLKTN 220          
BLAST of DY304582 vs. ExPASy Swiss-Prot
Match: CNO6L_HUMAN (CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  309 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKAGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 683
            R WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I +E++  + DII +QEV+  +YF + L  +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  172 RPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307          
The following BLAST results are available for this feature:
BLAST of DY304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CCR4_ASPFU5.524e-1133.97Glucose-repressible alcohol dehydrogenase transcri... [more]
NOCT_XENLA5.903e-1132.03Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1[more]
CNO6L_HUMAN7.709e-1131.88CCR4-NOT transcription complex subunit 6-like OS=H... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YB19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304582 ID=DY304582; Name=DY304582; organism=Citrus clementina; type=EST; length=923bp
CAAACATTCGGGAGAGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCC
GAAGCCACTTCCTCCTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCAC
CTCCGCGCCGAGCGGCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCT
CCTCCTCCTGCTGCAAGACTACAAACACCATTTCCTGTGGCTTCAATGGT
CCCACCACACATTCCTCATCATCATCGCCGTCAACTCGTTCGTACTGCCG
TCGATGGTACAACCCTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTG
ACGTCCTCCGCCACTGGATCGACGCTGATCCTAATCCAATTTCATCTCAA
GAGAGATTCTCGGTCGTGTCATATAACATATTGGGAGATAAAAATGCTTT
CAAACATAGAGATTTATATCAAAATGTTCGGTATGAATACATGAAATGGA
ACCGTCGCAAAAGGTTAATATGCCAAGAGTTGATTGGATTGAACCCGGAT
ATTATCTGTATGCAAGAGGTGGACAGGTATTTTGATATTCTGAATGTTAT
GGAGAAAGCGGGATATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACG
TTGATGGTTGTGCGATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAG
CAAACAAGCATTGAATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACA
ACTTTCCGCTTTTGAGGCAGATGCGCAACACAAAAATCAAGAAGAGTACT
GGTTGGTAACATACACGTTCTTTAAAATCCAAACCGAGGGGAAGTGAAAT
TAAGTTAAATTTGTTTTCTTTCTTCAAGGGGACAAATCGTTGCCAAAAAA
TGGGGTAAAATCCCTGGTTGTGCTTGCTGGTGAATTCAATAACCCTCCCT
CCAAGTGCAATTTACAAATTTCT
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