DY304591

Overview
NameDY304591
Unique NameDY304591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length965
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: SRGEF_BOVIN (Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 56/167 (33.53%), Postives = 80/167 (47.90%), Query Frame = 3
Query:   54 GKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGVPVADG--LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGTGANGQLGHGDKDNRDSPTLVDFLKDKQVKRVVCGLNFTALICLHTWVSSVDHS 548
            G LF  G    G+LG G  E  L+      L+   I QVACG D ++ LT +G V + GS ++GQLGVP      ++P  +  E+    V  +A G  H  A T++  V+ WGTG    L    +      TL  FL  K+    V GL  +  +C+   ++  DHS
Sbjct:   68 GSLFVCGLNKDGQLGLGHTEEVLYFTPCKSLLGCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVIPQAI--ELLREKVVSIAAGLRHALAATASGTVFQWGTG----LASSGRRLCPGQTLPLFLTAKE-PSTVTGLENSQAVCV---LAGSDHS 224          
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: NEK8_HUMAN (Serine/threonine-protein kinase Nek8 OS=Homo sapiens GN=NEK8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 50/163 (30.67%), Postives = 84/163 (51.53%), Query Frame = 3
Query:   54 GKLFTW-----GDGDKGRLGHGDKEPRLFPECVAPLIDEN----ICQVACGHDLSVALTTSGHVYTMGSTAYGQLGV-PVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGTGANGQLGHGDKDNRDSPTLVDFLKDKQVKRVVCGLNFTALI 512
            G+L  W     G G    L    ++P+  P+ ++  ++      I  VACG   +  LT  G + T GS + G LG   + D   PT V+  +    V+ VACGA HV AL++  +++ WG G +G+LG G +++   P  V     ++ +RVVCG++ + ++
Sbjct:  351 GRLILWEAPPLGAGGGSLLPGAVEQPQ--PQFISRFLEGQSGVTIKHVACGDFFTACLTDRGIIMTFGSGSNGCLGHGSLTDISQPTIVEALLGYEMVQ-VACGASHVLALSTERELFAWGRGDSGRLGLGTRESHSCPQQVPMPPGQEAQRVVCGIDSSMIL 510          

HSP 2 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 50/166 (30.12%), Postives = 75/166 (45.18%), Query Frame = 3
Query:   57 KLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGV--------PVADGLVPTRV------DGEIAESFVEEVACGAYHVAALTSTSKVYTWGTGANGQLGHGDKDNRDSPTLVDFLKDKQVKRVVCGLNFTALI 512
            +LF WG GD GRLG G +E    P+ V     +   +V CG D S+ LT  G     GS  + +LG+        PV    V   +         + +  +  +  G  H AA+T++   YT+G+  +GQLG   +    +P  V  L+  ++  V CG  FT  I
Sbjct:  463 ELFAWGRGDSGRLGLGTRESHSCPQQVPMPPGQEAQRVVCGIDSSMILTVPGQALACGSNRFNKLGLDHLSLGEEPVPHQQVEEALSFTLLGSAPLDQEPLLSIDLGTAHSAAVTASGDCYTFGSNQHGQLGTNTRRGSRAPCKVQGLEGIKMAMVACGDAFTVAI 628          
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: IBTK_HUMAN (Inhibitor of Bruton tyrosine kinase OS=Homo sapiens GN=IBTK PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.360e-12
Identity = 56/165 (33.94%), Postives = 80/165 (48.48%), Query Frame = 3
Query:   54 GKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGV--PVADGLVPTRVDGEIAES-FVEEVACGAYHVAALTSTSKVYTWGTGANGQLG-----HGDKDNRDSPTLVDFLKDKQVKRVVCGLNFTALICLHT 524
            G+++T G G  GRLGHGD++  L P  V  L   N  QVA   D +V LT  G VYT G   + QLG+  P +   VP ++  +  +   +  VA G +H   L +   VYT G    GQLG     +G+K    +P  V  L  K +   +   +  A +C+ T
Sbjct:  196 GQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDHTVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFH-TVLWTREAVYTMGLN-GGQLGCLLDPNGEK-CVTAPRQVSALHHKDIALSLVAASDGATVCVTT 357          
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: IBTK_XENLA (Inhibitor of Bruton tyrosine kinase OS=Xenopus laevis GN=ibtk PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.389e-12
Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   54 GKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGV--PVADGLVPTRVDGEIAE-SFVEEVACGAYHVAALTSTSKVYTWGTGANGQLGHGDKDNRDS----PTLVDFLKDKQVKRVVCGLNFTALICL 518
            G+++T G G  GRLGHGD+   L P  V  L      QVA   D +V LT  G+VYT G   + QLG+  P  +  VP ++  +  +   V  VA G +H    T  + VYT G    GQLG+    N +     P  V  L  K +   +   +  A +C+
Sbjct:  197 GQVYTCGHGQGGRLGHGDELTCLVPRLVEGLRGHPCTQVAGAKDHTVVLTEDGYVYTFGLNTFHQLGIQPPPPNSNVPRQIQAKTMKGKTVLGVAAGRFHTVLWTKDA-VYTVGLN-GGQLGYLQDPNGEKFVSCPRQVSALHHKDINITLVSASDGATVCV 356          
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: RCC1_SCHPO (Protein pim1 OS=Schizosaccharomyces pombe GN=pim1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.777e-12
Identity = 55/162 (33.95%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   54 GKLFTWGDG--DKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGVPVAD-----GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGTGANGQLGHGDKDNRD-----SPTLVDFLKDKQVKRVVCGLNFT 503
            G  FTWG      G LG+ D + R        L +  ICQ+A G D  +ALTT+G VYT G+    QLG  + +     GL P      +A   +  V  G+YH  A+ +  +VY WG     Q G   +D  +      PTLVD L+   VK +  G + T
Sbjct:  193 GCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPE--ICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQ----PLALKNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHT 348          
BLAST of DY304591 vs. ExPASy Swiss-Prot
Match: ALS2_RAT (Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.338e-11
Identity = 51/151 (33.77%), Postives = 70/151 (46.36%), Query Frame = 3
Query:   57 KLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSTAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSK----VYTWG--TGANGQLGHGDKDNRDSPTLVDFLKDKQVKRVVCG 491
            +++TWG G +G+LGHGD  PRL P CV  L  + +  +  G   S+ALT    VY+ GS  +GQLG       VP R+    +ES V  VA G  +   L  T      +Y  G    A G     +     +P L+   K   + RV  G
Sbjct:  521 EVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEFPTTVP-RLSKVSSESGVWSVAAGHGYSLFLVDTEDFQPGLYYSGRQDRAEGDTLPENPSGTTTPVLLSCSKLGYISRVTAG 670          
The following BLAST results are available for this feature:
BLAST of DY304591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SRGEF_BOVIN1.155e-1233.53Secretion-regulating guanine nucleotide exchange f... [more]
NEK8_HUMAN1.155e-1230.67Serine/threonine-protein kinase Nek8 OS=Homo sapie... [more]
IBTK_HUMAN3.360e-1233.94Inhibitor of Bruton tyrosine kinase OS=Homo sapien... [more]
IBTK_XENLA4.389e-1233.33Inhibitor of Bruton tyrosine kinase OS=Xenopus lae... [more]
RCC1_SCHPO9.777e-1233.95Protein pim1 OS=Schizosaccharomyces pombe GN=pim1 ... [more]
ALS2_RAT6.338e-1133.77Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304591 ID=DY304591; Name=DY304591; organism=Citrus clementina; type=EST; length=965bp
TTGTAGTGGCGACTGATTCATCTAGTTCTTCACCTTCTGGGAGCACTTCT
TGTGGAAAGCTGTTCACCTGGGGGGATGGAGATAAAGGCCGACTTGGACA
TGGTGATAAAGAACCTAGACTATTTCCTGAATGTGTGGCTCCGTTGATTG
ATGAAAACATCTGTCAAGTAGCCTGTGGACATGATCTTTCTGTTGCTCTG
ACAACCTCAGGACATGTATATACAATGGGGAGTACAGCTTATGGACAGCT
AGGGGTTCCCGTTGCTGATGGGTTGGTTCCTACTCGTGTTGACGGTGAAA
TAGCCGAAAGTTTTGTAGAAGAGGTTGCCTGTGGTGCTTATCATGTTGCT
GCTCTGACTTCCACAAGTAAGGTCTACACTTGGGGAACGGGTGCCAATGG
GCAACTGGGCCATGGGGACAAAGATAATAGAGATTCACCTACACTAGTTG
ATTTCCTGAAAGATAAGCAAGTCAAGCGTGTAGTGTGTGGCTTGAACTTT
ACAGCTCTTATATGTCTTCATACGTGGGTATCTAGTGTTGACCACTCTGT
GTGCTCCCGTTGTCATAACCCCTTTGGTTTCAGAAGGAAACGTCACAATT
GTTACCACTGCTGGTTAGTCTTTTGCCAAGCCTGCACCAATAGGAAATCT
CTGAAAACTGCTCTGGCTCCAACCCTAAACACCGCCTATCAGGTGTGGGA
TAAATGCTTTACTACAACTTAACCATTCTGCCCCTTACCTGTACACGGAC
CGGTCGAAATACTTACCGTCGAGCCAAACTACCCAAAACCCAACCCCGAA
CCTGTAAATCTCCTTACCTTCTGAACCTTGATGGTAAGGAAGGCCCCGGG
TCCCCCCATTTGCCCGAACTTTGTTAAATTTTTTCACCCTTCGGAACCAC
CACATAACTCACAACCCTGTATATTCCCGAGGGACATCCCCCTTGAATTT
CGACATTTGCCCCCC
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