DY304602

Overview
NameDY304602
Unique NameDY304602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_RHORU (ATP synthase gamma chain OS=Rhodospirillum rubrum GN=atpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.350e-17
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYT---QVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLS---PELV----EREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLE 916
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +  L R+  K I   I +     + ++   + S L  D+ +  EFD   ++Y++F S +S + T   ++    P  V    + +  +G K +    YE E  E   EIL +L        +F G+LE
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQIIPFAVPTTVAAGNDNDRTAGPKAI----YEYEPSEE--EILADLLPKNVAIQVFRGMLE 246          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_RHORT (ATP synthase gamma chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.350e-17
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYT---QVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLS---PELV----EREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLE 916
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +  L R+  K I   I +     + ++   + S L  D+ +  EFD   ++Y++F S +S + T   ++    P  V    + +  +G K +    YE E  E   EIL +L        +F G+LE
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQIIPFAVPTTVAAGNDNDRTAGPKAI----YEYEPSEE--EILADLLPKNVAIQVFRGMLE 246          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_ACICJ (ATP synthase gamma chain OS=Acidiphilium cryptum (strain JF-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 64/243 (26.34%), Postives = 120/243 (49.38%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-------DTPTVDA--------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLE 916
            S + +RNR+ SVK+ QKITKAMKMVAA+KLR  Q +AE +R       A++G       + P   A        + ++IV +S+D+GL G  N++  + +++  +      K+ +   +G K +    RD ++ I      + K  + +     +A+ I+    + +FD   +++++F SV+S +P+   ++     +   ++ G       YEIE  +  G +L  L        +++ +LE
Sbjct:    3 SLKALRNRIASVKSTQKITKAMKMVAAAKLRRAQAQAEAARPYATRMAAMMGALAEGAAENPNAPALLVGNGADRTHLIVVVSADRGLAGPFNASINRAARARARKLEAEGKQVRLFTVGRKGRDFFRRDMREKIIGEANFVGKKTIEFADAEAIANQIIAAFNDGKFDVCTLMFNRFVSVMSQVPSETPLIPASAGQAANDNAGSDQPAGDYEIEPDD--GTLLDRLLPRNLAVQIYSALLE 243          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_AZOC5 (ATP synthase gamma chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 68/225 (30.22%), Postives = 108/225 (48.00%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL 862
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q+ AE +R   +   ++LG          DTP     T   +K++++  +S++GLCG  N+  V+  +    L  G  K+ K+  +G K    L R     I  ++       L +     +A+ I+      EFD   + +S F SV+S +PT   ++     + E  S      +  YE E  E   ++L
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDSVLGNIASGVTLSADTPLLLSGTGKDEKHLLLVCTSERGLCGAFNTNIVRAVRERANLLIGQGKDVKFFCVGRKGYDQLRRLYPGQIVELVDLRSVRNLGFVNAHDIAEKIIDRFNKGEFDVCTLFFSHFKSVISQVPTAQQIIPATFEKAEGPSA-----VYDYEPEESEILADLL 222          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.273e-16
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTPTV---DAKKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAE 793
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P +     K NV  +V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT A  L P   + EAE
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDNVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT-AQQLIPASADNEAE 202          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_RHIME (ATP synthase gamma chain OS=Rhizobium meliloti GN=atpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL 862
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     ++++  ++++GLCGG NS   + ++   +      K  K + +G+K   +L RD    I   + + E++K    N  ++     ++    EFD   + YS+F SV+S +PT   ++     E  A  G     +  YE E G    +++
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMAAVLANIAQAVGADDSAPRLMTGTGRDDTHLVIVCTAERGLCGGFNSQIARFARDHVRKLLAQGKTVKIICVGKKGFDMLRRDFASLIIDRVDLREVKKIGFENADRIGHKVIELFDKGEFDVCTLFYSEFKSVISQIPTAQQLIPASAGEVAAAEGEGASAIYEYEPEAGAILSDLI 227          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 65/232 (28.02%), Postives = 124/232 (53.45%), Query Frame = 2
Query:  248 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQ--VKAENSRGLW-QPFTALLGDTPTVDAK-KNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKEN-KYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK-NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLEKGC 925
            +++  R+KSVKNIQKIT++MKMV+A+K    +  +KA    G+  Q F       P   A+ K +++ ++SD+GLCG +++   ++ +         D+ N K   +G+K++AIL R   K+I ++  E+ + P  +   S +A+++L+   ++   +I+Y++F SVVS+  +   + S   VE+      KL   DS +        +++ +  +F    ++F  + E  C
Sbjct:   30 KMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRG----ELAQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSE----KLAVYDSLD-------SDVVKSYLEFSLASLIFYTMKEGAC 246          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_SCHPO (ATP synthase subunit gamma, mitochondrial OS=Schizosaccharomyces pombe GN=atp3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 64/228 (28.07%), Postives = 112/228 (49.12%), Query Frame = 2
Query:  254 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--TPTVDAKKNVIVTISSDKGLCGGINSTAVK-ISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELDSYEIEGGETKGEIL*NLADFQFPCVMFNGVLEKGC 925
            +  R+KS+KNI+KITK +K VA +KL   Q   E S   ++    +  +  T   +  K ++V  SSDKGLCGGI+S+  + I + LH  +    +     ILGEK +  L+R   +   L    +     ++ +   ++ +IL++  ++D + ++Y+KF S VSF   M  + + + +            L +YE+       E+   L +F F   +F+ + E  C
Sbjct:   37 IEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEGKTLMVACSSDKGLCGGIHSSISRLIRRELH--DPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESP-------NLSAYEV-----SDEVHQPLMEFAFANAIFSAMAEAHC 250          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_MAGSA (ATP synthase gamma chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 77/252 (30.56%), Postives = 124/252 (49.21%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDI---LKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREA--ESGGKLVELDSYEIEGGETK--GEIL-*NLADFQFPCVMFNGVLEKGCR 928
            S + +R ++ SVK+ +KIT AMKMVAASKLR  Q  AE +R   +    +LG                + T   K +++V +++D+GLCGG NS+ V+ +K++        K  K + +G KA+  L RD  + +      L +  + + +   +A  I       EFD   ++Y+KF S ++   T   V+   + E+ A  E+G K +    YE E  E +   EIL  NLA   F  ++ +   E+G R
Sbjct:    3 SLKDLRMKIVSVKSTRKITSAMKMVAASKLRRAQTAAEAARPFAERMERMLGTLAASLAGQSGAPRMISGTGFDKVHLLVAVTADRGLCGGFNSSIVRATKAMAADLLKQGKTIKIMPVGRKAREQLRRDYGQYMIEGFENLGRKGIVFAEADQVASQISAMFDAEEFDVCTVVYNKFKSAIAQEVTRQQVIPFPVPEQAAKSETGPKAI----YEFEPSEEEILAEILPRNLATQMFRALLESQASEQGAR 250          
BLAST of DY304602 vs. ExPASy Swiss-Prot
Match: ATPG_SINMW (ATP synthase gamma chain OS=Sinorhizobium medicae (strain WSM419) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.704e-16
Identity = 65/211 (30.81%), Postives = 104/211 (49.29%), Query Frame = 2
Query:  242 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLVELD 820
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     +++V  ++++GLCGG NS   + ++   +      K  K + +G+K   IL R+    I   + + E++K    N  ++     ++  N EFD   + YS+F SV+S +PT   ++     E  AE    + E +
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMAAVLSNIAQAVGADDSAPRLMTGTGKDDTHLLVVCTAERGLCGGFNSQIARHARDHVRKLLAQGKTVKIICVGKKGFDILRREFASLIIDRVDLREVKKIGFENADRIGHKVIELFDNGEFDVCTLFYSEFKSVISQIPTAQQLIPASAGEAVAEGASAIYEYE 213          
The following BLAST results are available for this feature:
BLAST of DY304602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ATPG_RHORU3.350e-1730.40ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_RHORT3.350e-1730.40ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_ACICJ5.715e-1726.34ATP synthase gamma chain OS=Acidiphilium cryptum (... [more]
ATPG_AZOC57.464e-1730.22ATP synthase gamma chain OS=Azorhizobium caulinoda... [more]
ATPG_BRUC21.273e-1633.83ATP synthase gamma chain OS=Brucella canis (strain... [more]
ATPG_RHIME1.663e-1629.33ATP synthase gamma chain OS=Rhizobium meliloti GN=... [more]
ATPG_DROME1.663e-1628.02ATP synthase subunit gamma, mitochondrial OS=Droso... [more]
ATPG_SCHPO2.836e-1628.07ATP synthase subunit gamma, mitochondrial OS=Schiz... [more]
ATPG_MAGSA2.836e-1630.56ATP synthase gamma chain OS=Magnetospirillum magne... [more]
ATPG_SINMW3.704e-1630.81ATP synthase gamma chain OS=Sinorhizobium medicae ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YC18RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304602 ID=DY304602; Name=DY304602; organism=Citrus clementina; type=EST; length=944bp
ATTTGTTCTATACCTGAGCTCGCACGACCCAAACAGAACATAAAGCTTTG
GATCTGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGACGACGG
TTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGGCGATT
CGCCACCCCTCTCATCTCCCCATGTCCAATCGCCGCAATCAGATCCCCTT
TCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAACTCAA
ATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATTACAAA
GGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAG
CTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGAC
ACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGA
CAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGA
GTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATC
TTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCAAAGAAAGATAT
TGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCCAGG
TTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTG
AGGATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAAT
GGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGG
GAAAGCTGGTTGAGCTAGACTCCTATGAAATTGAAGGGGGTGAAACAAAG
GGTGAAATACTTTAAAATCTGGCTGATTTCCAATTTCCCTGTGTCATGTT
CAATGGGGTGTTGGAAAAAGGCTGCCGTTAACCAAGGGGCAAGG
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