DY304653

Overview
NameDY304653
Unique NameDY304653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304653 vs. ExPASy Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 55/172 (31.98%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  236 GYVTVNEESGRALFYWFVEA---VEDPDSK-PLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSY-SNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKGYMVG 730
            GYV V  ++   +F+W  ++   VE+P    P++LWL GGPG S +  G  +E+GP    +KP   T       W + A++LF+DSPVG G+S+      D+    D+  A+D  K L +   +         +I  ESYGG    +L  ++I   Q +G+  ++L G ++G
Sbjct:   37 GYVEVRPKAH--MFWWHYKSPYRVENPSKPWPIILWLQGGPGASGVGIGNFQEVGPLDTFLKPRNST-------WLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQ-SGKLKLHLGGVILG 198          
BLAST of DY304653 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 59/155 (38.06%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  239 YVTVNEESGRALFYWFVEAV---EDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVP----QLSKAIIR 676
            YVTV +++   +F+W   A    ++    PLV+WL GGPG SS  +G  EEIGP    +KP   T       W Q A++LF+D+PVG GFSY N  S          A D +  L  +     +F+   FYI  ESYGG        +L KAI R
Sbjct:   42 YVTVRKDA--YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTT-------WLQAASLLFVDNPVGTGFSYVN-GSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQR 186          
The following BLAST results are available for this feature:
BLAST of DY304653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SCP51_ARATH4.924e-1731.98Serine carboxypeptidase-like 51 OS=Arabidopsis tha... [more]
RISC_HUMAN9.285e-1638.06Retinoid-inducible serine carboxypeptidase OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YE23RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304653 ID=DY304653; Name=DY304653; organism=Citrus clementina; type=EST; length=858bp
AACGTTTTTGCTTGATTATGTCTTCTTTATAAGTCGCAGTACCCCAGTAC
ACTAAACCATATAAAAAATGGCTTATAATCCAAAAGGGGCTTCCTTTCTT
GTTCAAATCTTGTTCATTTGCATAATTTTTTATCTGGGCAGTGCCTTTTC
AACAGACCCAGTTGCCCAGCAAAAACTTGACAGAGTTGGGAAGCTACCTG
GGCAAAATTTCAATGTCAACTTTGCCCATTACTCTGGTTATGTCACAGTC
AACGAAGAATCCGGGAGGGCTCTCTTTTATTGGTTCGTTGAAGCTGTTGA
AGATCCTGATTCCAAGCCTCTTGTGCTTTGGCTCAATGGAGGGCCTGGGT
GTTCATCCATTGCTTATGGAGAGGCAGAGGAAATAGGTCCTTTTCACATC
AAGCCAGATGGGAAGACCTTATACTTGAATCCTTACTCTTGGAATCAAGT
TGCCAACATTCTGTTTCTTGATTCCCCCGTTGGTGTTGGTTTTTCATATT
CAAATACATCCTCTGATATTACGACCAATGGCGATAAAAGGACTGCGGAG
GATTCCCTAAAATTTTTACTAAAGTGGTTAGAACGGTTTTCACAATTTAA
AGGAAGGGATTTCTACATCTCCGGGGAGAGTTATGGAGGGCATTATGTTC
CTCAGTTAAGCAAAGCAATCATAAGGCACAACCAAGCAACTGGGGAAAAA
GCAATTAATCTGAAGGGCTACATGGTGGGAAAATGCTCCAACTGATGATT
ACCACGATTAACTGGGCCCTTTTCCAGTTTTGGTGGTCAGCTGGTTTGAT
ATCTGATGAAACGTACAAGCCACTAAACCTTCAATGTTATTAATAATTCT
TTGTCCCC
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