DY304778

Overview
NameDY304778
Unique NameDY304778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_PONAB (AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.598e-47
Identity = 95/214 (44.39%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLIYRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVDAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.617e-47
Identity = 94/214 (43.93%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++    +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKGQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_CHICK (AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.920e-46
Identity = 95/214 (44.39%), Postives = 135/214 (63.08%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S      T       T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ-----TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 212          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.172e-41
Identity = 97/217 (44.70%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            ++ASA+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F +++                   F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++ESVN L+S+ G+VL  ++ G I M+ FL GMPE
Sbjct:    1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPE 209          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.172e-41
Identity = 97/217 (44.70%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            ++ASA+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F +++                   F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++ESVN L+S+ G+VL  ++ G I M+ FL GMPE
Sbjct:    1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPE 209          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 7.066e-41
Identity = 96/217 (44.24%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            ++ASA+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F +++                   F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++E+VN L+S+ G+VL  ++ G I M+ FL GMPE
Sbjct:    1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPE 209          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 7.066e-41
Identity = 96/217 (44.24%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            ++ASA+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F +++                   F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++E+VN L+S+ G+VL  ++ G I M+ FL GMPE
Sbjct:    1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPE 209          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.056e-40
Identity = 88/216 (40.74%), Postives = 133/216 (61.57%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            +AASAI+ ++ +G VLI+R YR DV  ++   F + I++ ++L   P+ Q  G S+ Y++                     F+ + + +F  YF    +E++IR+NFV+IYEL+DE+MDFGYPQ+  P+IL+ YITQEG +    ++    P       +TGAV WR+EG+ Y KNEVFLD+VES+N L+S+ G+VL  ++ G + MK  L GMPE
Sbjct:    1 MAASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILEEEDLNLKPIIQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFK-ELEEESIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAA-----ITGAVSWRKEGIKYNKNEVFLDVVESINLLVSANGTVLRSEIVGAVKMKSKLSGMPE 210          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 8.084e-37
Identity = 83/217 (38.25%), Postives = 127/217 (58.53%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            +A SA++ L+L+G  +I+R YR D+    +D F   +M+ +E G+  PV      +F +++                     F+ + V +F  YF    +E+++R+NFV+IYELLDE+MDFG+PQ     IL+ YITQEG +   + +P         + VT AV WR EG+ Y+KNEVFLD++ESVN L S+ G+VL  ++ G + M+ +L GMPE
Sbjct:    1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDV-EEESVRDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKLISAPRPP--------MAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPE 208          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 1.056e-36
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 1
Query:  151 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTC-PVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPE 798
            ++ASA++ L+++G  LI+R Y+ DV  + +D F   +MQ +E G   P+   G   F +++                   + F+ + V +F  YF    +E++IR+NFV++YELLDE+MDFG+PQ    +IL+ YITQ+G +         R  P     VT AV WR EG+ YKKNEVF+D++ESVN L+++ GSVL  ++ G I +K FL GMPE
Sbjct:    1 MSASAVFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEGALTPLLSHGRVHFLWIKYSNLYLVATTLKNANASLVYSFLYKIVEVFSEYFK-ELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGNKLETGKS---RVPPT----VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLSGMPE 209          
The following BLAST results are available for this feature:
BLAST of DY304778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP2M1_PONAB6.598e-4744.39AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 P... [more]
AP2MA_DANRE8.617e-4743.93AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2M1_CHICK1.920e-4644.39AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M... [more]
AP1M1_HUMAN3.172e-4144.70AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN3.172e-4144.70AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M1_RAT7.066e-4144.24AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE7.066e-4144.24AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M_DICDI2.056e-4040.74AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M_CAEEL8.084e-3738.25AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M2_BOVIN1.056e-3639.63AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YK22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304778 ID=DY304778; Name=DY304778; organism=Citrus clementina; type=EST; length=911bp
ACGAGCTATTTGAATTTCTAAACAAACTCTCATCGTCCTCTTCCCCCAAT
TCAAATCCCTGCCACCACCGTCTTTTCTTTTTAAAATTCCCCAGATCTGG
GACCCTCACCTTGAGTTATCACGGTTGATCCCACTGGATCGGAGATGCCG
GTGGCTGCTTCTGCTATCTACTTCTTAAATCTTCGTGGCGATGTCCTCAT
CAATCGTCTCTATCGCGACGATGTCGGGGGAAATATGGTGGATGCATTTC
GAACGCATATTATGCAAACAAAAGAATTAGGGACGTGTCCGGTGCGCCAG
ATCGGAGGCTGCTCTTTCTTTTACATGAGAATCAGCAATGTTTACATTGT
TATTGTTGTTAGCAGCAACGCTAATGTCGCTTGCGCATTTAAGTTTGTTG
TCGAGGCAGTTGCTCTGTTTAAATCTTATTTTGGTGGTGCTTTCGATGAA
GATGCTATTCGGAATAATTTTGTTCTGATTTATGAGCTGTTGGATGAAAT
CATGGACTTTGGTTACCCGCAGAATCTCTCTCCTGAGATTTTAAAGCTTT
ATATCACTCAAGAAGGGGTGCGGTCACCATTTTCATCCAAGCCTACAGAT
AGACCTGTCCCTAATGCAACTTTACAAGTTACGGGTGCAGTTGGTTGGCG
TAGAGAGGGACTTGTTTACAAGAAAAATGAGGTCTTTCTTGATATTGTGG
AAAGTGTAAATCCTCTGATGTCTTCAAAAGGTAGTGTTCTACCTTGTGAT
GTAACGGGGAAGATTCCTATGAAATGCTTCCTCCCCGGAATGCCTGAATT
TGAATTTAGGTTTAAATGACCAAATTGGCCTTGAAAAAGGAATCCCACCC
TAAATCCCCTCCTAATAAAAATTGGAAAAACAATTGAACCTTAAGGAAGT
TTCTTCCCACC
back to top