DY304783

Overview
NameDY304783
Unique NameDY304783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.263e-12
Identity = 55/203 (27.09%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  330 EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLW--PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRL-EAFGCCVSYDSRNKKPSVTYPF---YPDVCELAPKSDVLLSCCALTDQTHHLIK*AGPVGPGEKRSIISVGLAAIINEKEMVGCLLPGKIGRAGIGLVRKIP 920
            ++R     S G ++ DV    +RG+ L +   V +E VAD  + L++   R++      V+ G W   I  ++  G  +  K++GI+G+G IG  +A+R    FG  + Y++R         F   Y D+  L  +SD L     LT+QTHH+I             +I+ G   +++E+ ++  L    I  AG+ +  + P
Sbjct:   65 KLRAASTISVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIGPDW-FGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAGLDVFEQEP 266          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 42/139 (30.22%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VTA+++    ++++V     G++++D+    R+GV + N  N  S   A+   G+L+ + R++  A   ++ G W  + +  +G++L GK +GI+GLG IG EVA R++AFG   V YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKW--DRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYD 175          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.674e-12
Identity = 55/220 (25.00%), Postives = 97/220 (44.09%), Query Frame = 3
Query:  258 AHSVKAIFSSACAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL-GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-----DSRNKKPSVTYPFYPDVCELAPKSDVLLSCCALTDQTHHLIK*AGPVGPGEKRSIISVGLAAIINEKEMVGCLLPGKIGRAG 896
            A SV A+  +       E++  +PE ++ +   S G +HID+  C+ RG+ + NA +  +   A+ A+ LL+   R+    +  +R   WP      L G KL  K +GI G GSIG  +AKR + F   + Y      S + + S    F+  +  L   S         T +T +    A      +   +++     +++ + +V  L  G++  AG
Sbjct:   44 AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAG 263          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: DDH2_SCHPO (2-hydroxyacid dehydrogenase homolog 2 OS=Schizosaccharomyces pombe GN=SPAC186.02c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.799e-12
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  300 VTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCV-SYDSRNKKPSVTYPF-YPDVCELAPKSDVLLSCCALTDQTHHLIK*AGPVGPGEKRSIISVGLAAIINEKEMVGCLLPGKIGRAGI 899
            V A+ L+ L E  V+LV     G N++++       + + +  +     V+++ +GLL+ + RK+  A   VR+     N    LG  + GK VG++G G IGS VAK  +  FGC V +YD    K    Y   + +  E+  K+D L   C LT  T H++         +  +I++     +I+ K +V  +  G++G   I
Sbjct:   56 VDADTLKALAENGVKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVRED--DFNIVGLLGCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDINPDKKLENYGVQFVEQNEVLKKADFLCLHCPLTPSTTHIVNSDSLALMKKGVTIVNTSRGGLIDTKALVDAIDSGQVGGCAI 258          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.069e-11
Identity = 39/139 (28.06%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VTA+++    ++++V     G++++D+    R+G+ + N  N  S   A+   G+++ + R++  A   ++ G W  + +  +G++L GK +GI+GLG IG EVA R+++FG   V YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKW--DRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYD 175          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.069e-11
Identity = 40/139 (28.78%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VTA+++    ++++V     G++++D+    R+GV + N  N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG   + YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYD 175          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.396e-11
Identity = 39/139 (28.06%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VTA+++    ++++V     G++++D+    R+G+ + N  N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG   + YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYD 175          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.396e-11
Identity = 39/139 (28.06%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VTA+++    ++++V     G++++D+    R+G+ + N  N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG   + YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYD 175          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.823e-11
Identity = 56/248 (22.58%), Postives = 114/248 (45.97%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYDSRNKKPSVTYPF---YPDVCELAPKSDVLLSCCALTDQTHHLIK*AGPVGPGEKRSIISVGLAAIINEKEMVGCLLPGKIGRAGIGLVRKIPGSSGPAILPLKCFACTH 971
            E L       + +   +   VT++++    ++++V     G++++D+    R+G+ + N  N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG   + YD     P V+  F      + E+ P  D +     L   T  L+  +      +   +++     I++E  ++  L  G+   A + +  + P      +   K  +C H
Sbjct:   39 EELIAELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWE-RKKF-MGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP-IIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPH 283          
BLAST of DY304783 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 39/139 (28.06%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  240 EFLTLHAHSVKAIFSSACAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYD 653
            E L       + +   +   VT++I+    ++++V     G++++D+    R+G+ + N  N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG   + YD
Sbjct:   39 EELIAELQDCEGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWE-RKKF-MGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYD 175          
The following BLAST results are available for this feature:
BLAST of DY304783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
GHRB_ENTAG1.263e-1227.09Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
SERA_RAT2.154e-1230.22D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
DHGY_HYPME3.674e-1225.00Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
DDH2_SCHPO4.799e-1228.292-hydroxyacid dehydrogenase homolog 2 OS=Schizosac... [more]
SERA_MOUSE1.069e-1128.06D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_MACFA1.069e-1128.78D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_PANTR1.396e-1128.06D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN1.396e-1128.06D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_PIG1.823e-1122.58D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_BOVIN5.305e-1128.06D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304783 ID=DY304783; Name=DY304783; organism=Citrus clementina; type=EST; length=1028bp
GGGCAGGTGGTAGATGACTATAGACATGTGTGTAAAAAGAGCGCGGTGGC
AGCGGCCGGGATCTCGGGGGATACAAGAAGTTAACGCGACACAAGGCAAG
TGGCATCACTTCGCAATCCAATTCCCAGCAAGTGCTACTCTTAAGAAAAC
CATCAGGCTTCGCTATGTTAGGAGAACAGTTCTTTACCTCAAACAAATTC
CGATACTTGAAAGCATACGAATCAGCGCTTCCTCTACACGAATTCTTGAC
GCTACACGCGCACTCAGTGAAGGCCATCTTCTCCAGCGCATGTGCGCCGG
TTACAGCCGAAATCCTCCGCCTGCTTCCAGAGGTGCGGCTGGTGGTTGCC
ACAAGCGCCGGCCTTAACCATATTGACGTAGTAGAGTGCCGCCGCCGCGG
TGTGGCTCTGGCCAATGCTGGTAACGTTTTCTCTGAAGACGTGGCTGATT
ACGCGCTGGGCTTGCTAATTGATGTCCTGAGAAAACTTTCTGCTGCCGAT
TGCTTTGTCAGACAAGGGCTTTGGCCTATCAACGCTGAATTTCCGCTTGG
GTCTAAGTTGGGTGGCAAACGAGTTGGGATTGTTGGGCTGGGGAGCATTG
GGTCTGAAGTTGCCAAAAGGCTTGAAGCTTTCGGCTGCTGCGTTTCATAC
GACTCTAGGAATAAAAAGCCTTCTGTTACGTACCCTTTCTATCCGGATGT
CTGTGAACTTGCACCTAAGAGTGATGTCCTCCTCAGTTGCTGTGCATTGA
CTGATCAAACACATCACTTGATCAAATAAGCAGGTCCTGTTGGCCCTGGG
GAAAAAAGGAGTATTATTAGTGTAGGGCTTGCTGCCATTATTAATGAAAA
AGAAATGGTGGGGTGTTTGCTGCCAGGAAAAATTGGAAGGGCCGGGATCG
GACTTGTTCGAAAGATACCCGGAAGTTCCGGACCCGCCATTTTGCCTTTA
AAATGTTTTGCATGTACCCACAGGATGCCGACTTTTTCCCTCAAACCTTT
TAGGGAGGTGGAGTTAACTGTGGGGTTG
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