DY304814

Overview
NameDY304814
Unique NameDY304814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_DANRE (CUG-BP- and ETR-3-like factor 3 OS=Danio rerio GN=tnrc4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 46/144 (31.94%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  110 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520
            ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A KA + LH  K L G  + I+   ++++ R    LF+G + K  ++ + RK+ E  G  +E   +++ P   S  +G +F  Y +NA A+
Sbjct:    8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNALHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVLRGPDGAS--KGCAFVKYQSNAEAQ 148          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF4_MACFA (CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicularis GN=BRUNOL4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12
Identity = 46/144 (31.94%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  110 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520
            ++FIG +P++  E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++  +E A KA   LH  K L G  + I+   +++++R    LF+G + K  +ED+ R++ E  G  +E   +++ P   S  +G +F  Y ++A A+
Sbjct:   55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTILRGPDGNS--KGCAFVKYSSHAEAQ 195          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.459e-12
Identity = 46/170 (27.06%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   62 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            +K++ +++  L    + V+I  +  + ++ +  DL +P G    V L +D E G SKGF FV++ + E A+KA+DEL+ KE+ GK +    ++TK+                         L++ N+   W +D  R   E  G  + + ++++D    S  RGF F  Y
Sbjct:  212 KKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGT-ITSSKVMRDDSGVS--RGFGFVCY 377          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: DND1_XENLA (Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 472
            P +GSEVFIG +P+D  E+ L  L + +G ++E RLM    SG ++GFA+  + S+  A  AI  L+  E+ KG  I    S  K+ L +  +P N+ E+  + V+++V  GV +I L   P   S+
Sbjct:   73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAISAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHPSPTKESQ 198          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  110 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK-ELKGKT----IRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 484
            ++F+G +P+ A+EE++R   E  G+V EV L+KDK +G+ +G  FV + + + A +AI  LH++  L G T    +R +  E +       +LF+G++ K  TE E  ++    G  VE + L++D    SR  GF
Sbjct:  121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRDEYRQSRGCGF 255          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_MOUSE (CUG-BP- and ETR-3-like factor 3 OS=Mus musculus GN=Tnrc4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 44/148 (29.73%), Postives = 87/148 (58.78%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520
            P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K L G  + I+   +++++R    LF+G + K  T+++ RK+ E  G  ++   +++ P   S  +G +F  +  +A A+
Sbjct:    4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGTS--KGCAFVKFQTHAEAQ 148          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   62 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 412
            +KD+ ++   +  N + V++  + +D +EE+ RDL E  G++    L +D ESG+S+GF FV+F S + A  A++ L+ K+ KG+           +L++G    K+  E+E RK  E
Sbjct:  221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE 327          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 53/170 (31.18%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   26 EEEKPTASVGEDEKD------KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI---RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            E  K  AS  E+++       +H +         ++FIGGL  D +++DL+D     GDV +  L  D  +G S+GF FV F+  E   K +D+   K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D    ++ RGF F  +
Sbjct:   62 EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD-NKTNKRRGFCFITF 228          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   26 EEEKPTASVGEDEKD------KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI---RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            E  K  AS  E+++       +H +  A      ++FIGGL  D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D    ++ RGF F  +
Sbjct:   64 EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD-NKTNKRRGFCFITF 230          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: DND1_HUMAN (Dead end protein homolog 1 OS=Homo sapiens GN=DND1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 457
            PP GSEVFIG LP+D  E  L  L + +G ++E RLM    SG ++GFA+  + S+  A+ AI  LH+  L+    +    S  K  L +  +P N T       ++ +GPG++   L+  P
Sbjct:   54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSP 174          
The following BLAST results are available for this feature:
BLAST of DY304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CELF3_DANRE1.104e-1231.94CUG-BP- and ETR-3-like factor 3 OS=Danio rerio GN=... [more]
CELF4_MACFA1.442e-1231.94CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicul... [more]
PABP_CRYNE2.459e-1227.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
DND1_XENLA3.212e-1236.22Dead end protein homolog 1 OS=Xenopus laevis GN=dn... [more]
FCA_ARATH4.195e-1233.82Flowering time control protein FCA OS=Arabidopsis ... [more]
CELF3_MOUSE4.195e-1229.73CUG-BP- and ETR-3-like factor 3 OS=Mus musculus GN... [more]
PABP_COCIM5.479e-1232.20Polyadenylate-binding protein, cytoplasmic and nuc... [more]
HNRPD_RAT5.479e-1231.18Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
HNRPD_MOUSE5.479e-1231.18Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
DND1_HUMAN5.479e-1235.25Dead end protein homolog 1 OS=Homo sapiens GN=DND1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM15RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304814 ID=DY304814; Name=DY304814; organism=Citrus clementina; type=EST; length=938bp
TGATGATTATACTCCACATGTGGAAGAGGAAGAAAAGCCCACTGCTTCTG
TTGGTGAAGACGAGAAAGATAAGCATGCCCAGCTTCTTGCCCTCCCTCCT
AATGGCTCAGAAGTTTTCATTGGTGGGCTTCCAAAGGATGCATCGGAAGA
GGACTTGAGGGATCTGTGTGAACCAATAGGCGATGTTTTTGAGGTGAGGT
TAATGAAAGACAAGGAGAGTGGAGAAAGCAAGGGTTTTGCTTTTGTATCA
TTCAGATCAAAAGAGTTTGCCAAGAAGGCCATCGATGAGTTACACAGTAA
AGAACTTAAGGGTAAAACAATAAGGTGTTCACTGTCAGAGACTAAAAACA
GGTTGTTTATTGGTAATGTTCCGAAGAACTGGACAGAGGATGAGTTCAGA
AAAGTCATTGAGGATGTTGGTCCTGGAGTTGAAACCATTGAGCTCATAAA
GGATCCTCAAAATCCTTCTCGTAATCGTGGTTTTTCCTTTGCTTTGTATT
ACAATAATGCCTGTGCTGAATTATCAAGGCAGAAAATGCCCTGTGTAAAC
TTTAAGCTGGGAGGAAATACTCCCACCCTCTCAGGGGCTGATACGAATAA
TTAACCTGAACACTCTAGCTTCTGCCTCCTCCGGGAAAGGACTTTATTTG
AAAAAATAACTGACAAACCTTCTGCGGAGAAAAAAAAAAAACTCTTCCCG
CCGCATGGGGAATTTAGAAAAATTGGCCAGCTCCCTAGTGAAACGTGGAA
ACCATGATTATAGCTTATCCCTTAATTTTAAATGTCAAAGGAATTACAAG
TCTTTCAAGGATTCCAAAAACCTTAAAAATTTTGGGCATATTATGTAGAG
TTTCTACTAGTCAACCCACTCACTTTCAAAAAAGATTTAAGAACAAAATT
CCCACACTCATCCCTCGCGGTTCTCTTATACATACCCC
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