DY304814

Overview
NameDY304814
Unique NameDY304814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_HUMAN (CUG-BP- and ETR-3-like factor 3 OS=Homo sapiens GN=TNRC4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 44/149 (29.53%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520
            P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++   +++ P   S  +G +F  +  +A A+
Sbjct:    4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_BOVIN (CUG-BP- and ETR-3-like factor 3 OS=Bos taurus GN=TNRC4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 44/149 (29.53%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520
            P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++   +++ P   S  +G +F  +  +A A+
Sbjct:    4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL3B_XENLA (CUG-BP- and ETR-3-like factor 3-B OS=Xenopus laevis GN=tnrc4-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 41/137 (29.93%), Postives = 81/137 (59.12%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 484
            P+  ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A KA   LH  K L G  + I+   +++++R     LF+G + K  T+++ R++ E  G  ++   +++ P   S+   F
Sbjct:    4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NIDECTVLRGPDGTSKGCAF 139          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL3A_XENLA (CUG-BP- and ETR-3-like factor 3-A OS=Xenopus laevis GN=tnrc4-A PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 41/137 (29.93%), Postives = 81/137 (59.12%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 484
            P+  ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A KA   LH  K L G  + I+   +++++R     LF+G + K  T+++ R++ E  G  ++   +++ P   S+   F
Sbjct:    4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NIDECTVLRGPDGTSKGCAF 139          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 51/172 (29.65%), Postives = 76/172 (44.19%), Query Frame = 2
Query:   56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            +  K++ A+L A       V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK I    ++ K                          L++ N+     ++  RK     G    TI   K      R++GF F  +
Sbjct:  174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2
Query:   56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK I    ++ K                          L++ N+     ++  RK     G    TI   K      R++GF F  +
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2
Query:   56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK I    ++ K                          L++ N+     ++  RK     G    TI   K      R++GF F  +
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2
Query:   56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK I    ++ K                          L++ N+     ++  RK     G    TI   K      R++GF F  +
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL1A_XENLA (CUG-BP- and ETR-3-like factor 1-A OS=Xenopus laevis GN=cugbp1-A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 52/179 (29.05%), Postives = 97/179 (54.19%), Query Frame = 2
Query:   98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTP-TLSGADT 595
            P+  ++F+G +P+  SE++LR+L E  G V+E+ +++D+     +SKG  F++F +++ A +A + LH+ K L G      ++ + SE  N     +LFIG V KN  E++ R +    G  +E   +++ P   S  RG +F  +   + A+++ + M       G ++P  +  ADT
Sbjct:   13 PDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMVSKNCNENDIRAMFSPFGQ-IEECRILRGPDGMS--RGCAFVTFTTRSMAQMAIKSMHQAQTMEGCSSPIVVKFADT 188          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12
Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = 2
Query:    8 YTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 487
            Y P       P+ S          QL     + + ++I GLP   +++DL  LC+P G +   + + DK + + KG+ FV F S   A+KA+  L +  ++ +  +    +  N L+I N+P +  E E   +++  G  + T  +++D    SR  GF+
Sbjct:   28 YAPAPHPMAPPSPSTNSSSNSSGEQL-----SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTN-LYISNLPISMDEQELENMLKPFGHVIST-RILRDANGVSRGVGFA 180          
The following BLAST results are available for this feature:
BLAST of DY304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CELF3_HUMAN5.479e-1229.53CUG-BP- and ETR-3-like factor 3 OS=Homo sapiens GN... [more]
CELF3_BOVIN5.479e-1229.53CUG-BP- and ETR-3-like factor 3 OS=Bos taurus GN=T... [more]
CEL3B_XENLA5.479e-1229.93CUG-BP- and ETR-3-like factor 3-B OS=Xenopus laevi... [more]
CEL3A_XENLA5.479e-1229.93CUG-BP- and ETR-3-like factor 3-A OS=Xenopus laevi... [more]
PABP3_HUMAN7.156e-1229.65Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP1_PONAB7.156e-1229.65Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN7.156e-1229.65Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN7.156e-1229.65Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
CEL1A_XENLA7.156e-1229.05CUG-BP- and ETR-3-like factor 1-A OS=Xenopus laevi... [more]
RBMS3_MOUSE9.346e-1226.25RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM15RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304814 ID=DY304814; Name=DY304814; organism=Citrus clementina; type=EST; length=938bp
TGATGATTATACTCCACATGTGGAAGAGGAAGAAAAGCCCACTGCTTCTG
TTGGTGAAGACGAGAAAGATAAGCATGCCCAGCTTCTTGCCCTCCCTCCT
AATGGCTCAGAAGTTTTCATTGGTGGGCTTCCAAAGGATGCATCGGAAGA
GGACTTGAGGGATCTGTGTGAACCAATAGGCGATGTTTTTGAGGTGAGGT
TAATGAAAGACAAGGAGAGTGGAGAAAGCAAGGGTTTTGCTTTTGTATCA
TTCAGATCAAAAGAGTTTGCCAAGAAGGCCATCGATGAGTTACACAGTAA
AGAACTTAAGGGTAAAACAATAAGGTGTTCACTGTCAGAGACTAAAAACA
GGTTGTTTATTGGTAATGTTCCGAAGAACTGGACAGAGGATGAGTTCAGA
AAAGTCATTGAGGATGTTGGTCCTGGAGTTGAAACCATTGAGCTCATAAA
GGATCCTCAAAATCCTTCTCGTAATCGTGGTTTTTCCTTTGCTTTGTATT
ACAATAATGCCTGTGCTGAATTATCAAGGCAGAAAATGCCCTGTGTAAAC
TTTAAGCTGGGAGGAAATACTCCCACCCTCTCAGGGGCTGATACGAATAA
TTAACCTGAACACTCTAGCTTCTGCCTCCTCCGGGAAAGGACTTTATTTG
AAAAAATAACTGACAAACCTTCTGCGGAGAAAAAAAAAAAACTCTTCCCG
CCGCATGGGGAATTTAGAAAAATTGGCCAGCTCCCTAGTGAAACGTGGAA
ACCATGATTATAGCTTATCCCTTAATTTTAAATGTCAAAGGAATTACAAG
TCTTTCAAGGATTCCAAAAACCTTAAAAATTTTGGGCATATTATGTAGAG
TTTCTACTAGTCAACCCACTCACTTTCAAAAAAGATTTAAGAACAAAATT
CCCACACTCATCCCTCGCGGTTCTCTTATACATACCCC
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