DY304814
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_HUMAN (CUG-BP- and ETR-3-like factor 3 OS=Homo sapiens GN=TNRC4 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 44/149 (29.53%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520 P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A KA LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++ +++ P S +G +F + +A A+ Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CELF3_BOVIN (CUG-BP- and ETR-3-like factor 3 OS=Bos taurus GN=TNRC4 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 44/149 (29.53%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAE 520 P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A KA LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++ +++ P S +G +F + +A A+ Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL3B_XENLA (CUG-BP- and ETR-3-like factor 3-B OS=Xenopus laevis GN=tnrc4-B PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 41/137 (29.93%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 484 P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA LH K L G + I+ +++++R LF+G + K T+++ R++ E G ++ +++ P S+ F Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NIDECTVLRGPDGTSKGCAF 139
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL3A_XENLA (CUG-BP- and ETR-3-like factor 3-A OS=Xenopus laevis GN=tnrc4-A PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 41/137 (29.93%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 484 P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA LH K L G + I+ +++++R LF+G + K T+++ R++ E G ++ +++ P S+ F Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NIDECTVLRGPDGTSKGCAF 139
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 51/172 (29.65%), Postives = 76/172 (44.19%), Query Frame = 2 Query: 56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499 + K++ A+L A V+I +D +E L+DL G V++M D ESG+SKGF FVSF E A+KA+DE++ KEL GK I ++ K L++ N+ ++ RK G TI K R++GF F + Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2 Query: 56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499 + K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKGF FVSF E A+KA+DE++ KEL GK I ++ K L++ N+ ++ RK G TI K R++GF F + Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2 Query: 56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499 + K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKGF FVSF E A+KA+DE++ KEL GK I ++ K L++ N+ ++ RK G TI K R++GF F + Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 2 Query: 56 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALY 499 + K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKGF FVSF E A+KA+DE++ KEL GK I ++ K L++ N+ ++ RK G TI K R++GF F + Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: CEL1A_XENLA (CUG-BP- and ETR-3-like factor 1-A OS=Xenopus laevis GN=cugbp1-A PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 52/179 (29.05%), Postives = 97/179 (54.19%), Query Frame = 2 Query: 98 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTP-TLSGADT 595 P+ ++F+G +P+ SE++LR+L E G V+E+ +++D+ +SKG F++F +++ A +A + LH+ K L G ++ + SE N +LFIG V KN E++ R + G +E +++ P S RG +F + + A+++ + M G ++P + ADT Sbjct: 13 PDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMVSKNCNENDIRAMFSPFGQ-IEECRILRGPDGMS--RGCAFVTFTTRSMAQMAIKSMHQAQTMEGCSSPIVVKFADT 188
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12 Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = 2 Query: 8 YTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 487 Y P P+ S QL + + ++I GLP +++DL LC+P G + + + DK + + KG+ FV F S A+KA+ L + ++ + + + N L+I N+P + E E +++ G + T +++D SR GF+ Sbjct: 28 YAPAPHPMAPPSPSTNSSSNSSGEQL-----SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTN-LYISNLPISMDEQELENMLKPFGHVIST-RILRDANGVSRGVGFA 180 The following BLAST results are available for this feature:
BLAST of DY304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >DY304814 ID=DY304814; Name=DY304814; organism=Citrus clementina; type=EST; length=938bpback to top |