DY304818

Overview
NameDY304818
Unique NameDY304818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.634e-24
Identity = 68/188 (36.17%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  298 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNL 861
            SSSRM+Y RFLEY+D + VKKVDL++N   AIV+ I+P++    Q VRV+LP  S EL+ K + K IDF AH +  +      NL+                                     ++KA+F ME  TG+ F+DVAG++EAK+   +  + L+  +        IP+    +GPPGTGK L
Sbjct:   37 SSSRMTYGRFLEYIDMNWVKKVDLYDNARTAIVDIINPDIKGEEQLVRVELPTFSSELVSKLKNKLIDFDAHPSSSN-----VNLVSWLSNLLLPLILIITLFFFFRRGNKSSSGPGQAFNFGKAKARFHMEAKTGIVFEDVAGIEEAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGPPGTGKTL 219          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.533e-11
Identity = 56/197 (28.43%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  316 YSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            YS FL  + K +V++V   ++G++  + A+     NR  R  V +P    +L+       +D +   ++ + G+ LF+ IGN                                   +SK+KFQ  P TGVTF DVAG D+AK    +    L++P        +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:  126 YSEFLNAVKKGKVERVKFSKDGSVLQLTAVD----NR--RATVIVPN-DPDLIDILAMNGVDISV--SEGEGGNGLFDFIGNLLFPLLAFGGLFYLFRGGQGGAGGPGGLGGPMDFGRSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARA-VAGEAGVPFF 312          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 55/202 (27.23%), Postives = 91/202 (45.05%), Query Frame = 1
Query:  301 SSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            S++  YS FL  + K +V++V   ++G+   + A+        +R  V +P    +L+       +D +   ++ + G+ LF++IGN                                   +SK+KFQ  P TGVTF DVAG D+AK    +    L++P        +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:  101 STQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDG------RRANVIVPN-DPDLIDILAMNGVDISV--SEGEGGNGLFSVIGNLLFPFIAFAGLFFLFRRSQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARA-VAGEAGVPFF 292          
The following BLAST results are available for this feature:
BLAST of DY304818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FTSH_CYACA1.634e-2436.17Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH5_ARATH3.533e-1128.43Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_CAPAN4.615e-1127.23Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304818 ID=DY304818; Name=DY304818; organism=Citrus clementina; type=EST; length=935bp
TTCCAAACAATTCTTTCTTTCAAGATGGCAGCTTCATCAGCTTGCCTTGT
AGGGAATATTTTGATAACACAAAAAACTAAAACAAATTTGAGCAAGGACT
TCCATGGTAGGCATCTTCTGTTTAACTCGAGTTTTCGATCATTGGAAAAG
AAGCCAAAAGTAGCCGTTGTAAAGGCATCTTTGAGCGAGAAGCAGCATGA
AGGAAGAAGAGGGTTTCTTAAGAAGCTGCTTGGAAATGTTGGAGTTGGTA
CTGCTTTGTTGGGGAGTGGGAAAGCCTATGCCGATGAACAGGGGGTTTCT
TCCTCGAGGATGTCTTACTCTAGGTTCTTGGAGTATCTTGATAAGGACAG
GGTGAAGAAGGTTGATTTGTTTGAGAATGGTACCATAGCTATTGTGGAGG
CTATTTCCCCTGAGTTGGGTAACCGGGTGCAACGAGTTCGCGTTCAACTT
CCAGGTCTAAGTCAGGAGCTTCTCCAGAAATTCAGGGAGAAGAACATTGA
TTTTGCTGCCCATAATGCTCAAGAGGACTCAGGATCATTGTTGTTTAACT
TGATTGGGAATCTGGCTTTCCCACTTATCTTAATTGGAGGGCTGTTCCTT
CTCTCAAGGCGTTCATCTGGTGGAATGGGCGGTCCTGGTGGGCCTGGTTT
CCCCCTTGCCTTTGGTCAGTCCAAAGCTAAATTCCAGATGGAACCAAATA
CTGGTGTGACATTTGATGATGTTGCCGGAGTTGATGAGGCAAAACAGATT
TCCTGGAAGTGGTGGAGTTCCCTTAGAAGCCCGAAAGATTTACTGCTATG
GGAACCTCGTATCCCAAGGGTGTTCTTCCCCCTTGGTCCTCCCGGAACTG
GGAAAAACCTCTCTTGCCAAAGCAAATTGCCGGTGAAACCCGGTGTTTCA
TTTTTTCTCCCAATCAGGGTCCGAATTTTTGTTAA
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