DY304835

Overview
NameDY304835
Unique NameDY304835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_ANAMM (50S ribosomal protein L25 OS=Anaplasma marginale (strain St. Maries) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  378 KVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 704
            ++ +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   81 EIQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVIASVSAT 189          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_SPHAL (50S ribosomal protein L25 OS=Sphingopyxis alaskensis GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 50/181 (27.62%), Postives = 84/181 (46.41%), Query Frame = 3
Query:   93 TIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDI 635
            T+ A  RE  G   S   R  GR+PAVV+                  ++  E K +   +K +    F ++   +++    G  +     + LP  V       R ++  F+       ++V VPVVF+  E  PGLK+GG L  +R  L+ +C A++I  +I +DV+  DIGD + +S++
Sbjct:    6 TLTAETRERGGKGASRELRRNGRVPAVVYG-----------GKEEPLMIHVEEKLL---MKQLMTGHFMNSVVMIEV---GGKQI-----RTLPKDVAFHPVKDRPIHADFLRIAKDATVQVAVPVVFQNEEKSPGLKRGGVLNIVRHELELVCDADNIPDEIAIDVTGFDIGDSIHISNV 164          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_ANAPZ (50S ribosomal protein L25 OS=Anaplasma phagocytophilum (strain HZ) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 47/203 (23.15%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 704
            + A  RE  G+  +   R++G IPAV++ ++        R P     ++    Q+  + K    P F      +++  G     ++         + +   +G I ++ F + D   E+K++VP+VF   + C G+K+GG +  +  SL   C   HI   +EVD+ ++ IG  + +SD+++  +  ++ K E   +  + A+
Sbjct:    9 VDASVRERCGTGSARALRARGLIPAVIYGKN--------RDP-----INISLSQVDFLKKCRTFPIFSKL---IELCIGEKKEYVITKD------IQKHPVSGAIAHVDFQFVDQDAEMKMEVPLVFLNEQKCVGVKRGGVINILHRSLIIRCSPHHIPKSLEVDLIDVAIGHSLHVSDLKLPSTINVVMKEEDPVIATVVAS 189          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_ANAMF (50S ribosomal protein L25 OS=Anaplasma marginale (strain Florida) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  378 KVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 704
            ++ +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   81 EIQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVVASVSAT 189          
The following BLAST results are available for this feature:
BLAST of DY304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RL25_ANAMM4.491e-1131.1950S ribosomal protein L25 OS=Anaplasma marginale (... [more]
RL25_SPHAL5.865e-1127.6250S ribosomal protein L25 OS=Sphingopyxis alaskens... [more]
RL25_ANAPZ5.865e-1123.1550S ribosomal protein L25 OS=Anaplasma phagocytoph... [more]
RL25_ANAMF5.865e-1131.1950S ribosomal protein L25 OS=Anaplasma marginale (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YN16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304835 ID=DY304835; Name=DY304835; organism=Citrus clementina; type=EST; length=915bp
CCGAAACAACCATGACGCTGTGGTGCCGCACTGTTCAAAAGGTGGCACAC
AACTCCAGGACACCGTTTTCACGGACCACTTCGTATTACCACACCATTCA
AGCCATCCCCAGAGAGTGCACCGGCAGCCGAGTCTCAGCCAGGGATCGAT
CCCAGGGTCGAATCCCAGCTGTCGTTTTCGCGCAGGACCTGCTTGATCAA
AATACCGACAGAAGATCACCGTCCAGGAAACAAATCTTATCCACCGAAAG
AAAGCAGATTCACTCCATCCTCAAGTCCGTAGAACTCCCCTTCTTTTGCT
CCACTACTTTCCCGCTGCAGATCCGTGCCGGTTCTGGGTCGTCGGTTTTG
CTTGATTCAGGAAAAGTGCTTCCCATTAAGGTTCATAGAGATGAAGAGAC
TGGGAGAATATTGAATTTGGTTTTTGTCTGGGCTGATGATGGAACGGAGT
TGAAAGTTGATGTGCCTGTTGTCTTTAAAGGAGTAGAGAGCTGTCCTGGT
CTCAAGAAAGGGGGATATTTGAAAAGTATTAGAACCAGCTTAAAATATCT
GTGCCCAGCTGAACATATTTCTCCCAAAATTGAGGTAGATGTCAGCAATC
TCGATATTGGAGATAGAGTATTCATGAGCGACATTGAGGTTCATCCATCC
TGGAAGCTTCTGAGCAAGAATGAGAAAATGCCTCTATGCAAGATCTCGGC
AACTAAGTTGGAAAACCCAGAACCTGCAGTGATGTAGGCACTGAAGTGGA
ACTTGGGCAAGGTTTGCAGATTTATGAGTAGAATACCTAAGAGAAGAAGC
GGAAAAAAAAAATGGGGGGTGGGGGTTAAAAAAAGAAAAAAAGAAAAAGA
GGAATAAACCGGTTTCTTTTACCCGGGCCTTCAGATGTGCTTTTGGTTTC
CGTGTTAAAAAAGGG
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