DY304843

Overview
NameDY304843
Unique NameDY304843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 99/169 (58.58%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI++AA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA +     LIP L  L ++L  KS  F DIVKIGRTH QDATP
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIEAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHLIPQLSALTDTLRDKSHAFADIVKIGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 98/169 (57.99%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F DIVKIGRTH QDATP
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_ECO57 (Fumarate hydratase class II OS=Escherichia coli O157:H7 GN=fumC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 98/169 (57.99%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F DIVKIGRTH QDATP
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-45
Identity = 95/169 (56.21%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL+NF IGG+R  MP  ++ A  ++KK AA+VN   G L P + + I QAA EV  G+ ++HFPLVVWQTGSGTQ+NMN NEVIA RA E+ G+ RG K  VHPNDHVNR+QSSND+FPT MHIAAA   + +L+P +  L   L  +S     +VK GRTH  DATP
Sbjct:   26 RSLENFAIGGQR--MPLAVIHALALIKKAAARVNDHLGELPPEVARLIEQAADEVLAGRHDEHFPLVVWQTGSGTQTNMNVNEVIAGRANELAGNPRGGKSPVHPNDHVNRAQSSNDSFPTAMHIAAAKAVHEQLLPAIAELSGGLAEQSARHASLVKTGRTHLMDATP 192          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 97/181 (53.59%), Postives = 119/181 (65.75%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP------FDSWARI 522
            RS +NF IG   E+MP  I+ AF +LKK AA VN + G L      AI  AA EV  GK +DHFPL VWQTGSGTQSNMN NEV+A R  ++L  K  +  +HPND VNRSQSSNDTFPT MHIAA    +  L+P L++   +LH K+ +F D++K+GRTH QDATP         WAR+
Sbjct:   27 RSYENFHIG--TEKMPMEIIYAFALLKKAAANVNKKLGQLSAEKADAITWAANEVLAGKHDDHFPLFVWQTGSGTQSNMNMNEVLARRGNQLLQEKGLDVTIHPNDDVNRSQSSNDTFPTAMHIAAYNKLDDHLLPTLQMFKQTLHQKAKQFDDVIKLGRTHLQDATPLTLGQEISGWARM 205          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_SHIFL (Fumarate hydratase class II OS=Shigella flexneri GN=fumC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.448e-45
Identity = 97/169 (57.40%), Postives = 117/169 (69.23%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL++F I    E+MP  ++ A  + K+ AAKVN +  L       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA +    +LIP LK L  +L  KS  F DIVKIGRTH QDATP
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLDLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.587e-45
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS+ NF+I    E+MP  ++ A   +K  AAKVN +  L +     AI++A++E+  GK  D FPLV+WQTGSGTQ+NMN NEVIAN A ++LG K G+  I+HPNDHVN+SQSSND FPT MHI+A +     L+PNL  L  S + KS+ FKDI+KIGRTH QDATP
Sbjct:   28 RSIYNFNIS--TEKMPYELIHALVQIKLVAAKVNKDLKLLEEKKADAIIKASEEILSGKYKDSFPLVIWQTGSGTQTNMNVNEVIANIAIKLLGGKYGDYSIIHPNDHVNKSQSSNDVFPTAMHISAVLSLKKNLLPNLIKLKKSFYDKSILFKDIIKIGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.294e-44
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS +NF IG E+  MP+ ++ AF  LKK  A VN + G LD A   AI+QA  E+  GK +D+FPL +WQTGSGTQSNMN NEVIANRA EI+G   R EK+VHPNDHVN SQSSNDTFPT M I A      +LIP L  L  +   K  EF  I+KIGRTH QDATP
Sbjct:   27 RSFENFKIGCEK--MPKVLIYAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLIPALDELIATFEKKVKEFDGIIKIGRTHLQDATP 193          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 97/169 (57.40%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL  FDIG +   MP  ++RAF ILKK AA  N + G  PA   + I+ AA E+  G+  DHFPL +WQTGSGTQ+NMN NEVIANRA  I G + G K  +HPNDHVN SQSSNDTFPT MHIAA  G  ++LIP+L+ L +SL+ K+  F  I KIGRTH  DA P
Sbjct:   29 RSLMFFDIGSDV--MPPDLIRAFAILKKAAAITNQDLGKLPADKAELIITAADEIIAGQWLDHFPLRIWQTGSGTQTNMNVNEVIANRAIAICGGELGSKNPIHPNDHVNMSQSSNDTFPTAMHIAAVAGLQTKLIPSLQALRDSLNEKAECFAGITKIGRTHLMDAVP 195          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 95/169 (56.21%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL NF I   +++MP+ ++RA  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA  + T  +LIP L  L   L  KS ++  I+KIGRTH QDATP
Sbjct:   28 RSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATP 194          
The following BLAST results are available for this feature:
BLAST of DY304843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_SALTI6.862e-4658.58Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_ECOL66.862e-4657.99Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_ECO576.862e-4657.99Fumarate hydratase class II OS=Escherichia coli O1... [more]
FUMC2_PSEAE1.170e-4556.21Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC_BACHD1.529e-4553.59Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_SHIFL4.448e-4557.40Fumarate hydratase class II OS=Shigella flexneri G... [more]
FUMC_WIGBR7.587e-4555.03Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_CAMJE1.294e-4458.58Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_SYNY32.207e-4457.40Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_RICPR2.207e-4456.21Fumarate hydratase class II OS=Rickettsia prowazek... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304843 ID=DY304843; Name=DY304843; organism=Citrus clementina; type=EST; length=563bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGGAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTCAAGGATATTGTTAAAATTGGGCGCACTCACACTCAAGATGCGACCCC
CTTTGACTCTTGGGCAAGAATTTAGTGGCTATACCAACCCAAATTGAAAT
AAGGCCATTGACC
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