DY304843

Overview
NameDY304843
Unique NameDY304843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.134e-40
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A      ++L P LK+L N+L  K  +F  I+KIGRTH QDATP
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATP 192          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.134e-40
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A      ++L P LK+L N+L  K  +F+ I+KIGRTH QDATP
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFESIIKIGRTHLQDATP 192          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_STAAM (Fumarate hydratase class II OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fumC PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.134e-40
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A      ++L P LK+L N+L  K  +F+ I+KIGRTH QDATP
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFESIIKIGRTHLQDATP 192          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.481e-40
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    4 SLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            SL+ F+I    E+MP  +++A   +K+ +A+VN +  L D    +AI+ A  E+  G   + FPL VWQTGSGTQSNMN NEV+ANRA E+L   +   +VHPNDHVN+SQSSND FP+ MHIAA +   ++LIP +K+L  +   KS+EF++I+KIGRTH QDA P
Sbjct:   14 SLKFFNIS--TEKMPWELIKALAQIKRVSAQVNYDLKLLDYERSQAIIAAVDEILSGNHKNEFPLSVWQTGSGTQSNMNMNEVLANRANELLRKNQINIVVHPNDHVNKSQSSNDVFPSAMHIAAVVNLKTKLIPVIKLLQKTFLKKSIEFRNIIKIGRTHLQDAIP 178          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_SYNPX (Fumarate hydratase class II OS=Synechococcus sp. (strain WH8102) GN=fumC PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.308e-40
Identity = 86/170 (50.59%), Postives = 115/170 (67.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL--DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSL NF IG   +++P  ++ A   +K+C A VN  +GL  D  +   I +A Q +  G+ +DHFPL VWQTGSGTQ+NMN NEVI+N AA+  G   G  + +HPNDH+NRSQS+ND FP  +H+AAA+     L+P LK L  SL +K+V ++DI+KIGRTH QDA P
Sbjct:   29 RSLNNFAIG--HQKIPAELIHALARIKQCCAAVNGRHGLLNDQQVA-LIERAGQAIQTGQQDDHFPLSVWQTGSGTQTNMNVNEVISNLAAQESGENLGSHRPLHPNDHINRSQSTNDVFPAAIHVAAALQLQQELLPELKRLIASLDAKAVAWQDIIKIGRTHLQDAVP 195          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.597e-40
Identity = 94/169 (55.62%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IG E   MP  I+ AF  LKK AA  N E G L       I     E+   KL D FPLV+WQTGSGTQSNMN NEVIANRA  + G   GEK I+HPND VN+SQSSNDT+PT MHIAA        IP ++ L  +   KS  FKD+VKIGRTH  DATP
Sbjct:   27 RSRNNFRIGPEAS-MPVEIIEAFAYLKKAAAFANAELGALTTEKRDLIAMVCDEILANKLADEFPLVIWQTGSGTQSNMNLNEVIANRAHVLQGGALGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEVTIPAIERLQKTFAIKSEAFKDVVKIGRTHLMDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.138e-39
Identity = 87/168 (51.79%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            R+++NF I G         VRA G++KK AA+ N + GL D     AI+ AA EV  G+ +D FP+ V+QTGSGT SNMNANEVIANRAAE+LG + G+++VHPNDHVN  QSSND  PT MH+A+     + + P L+ L   L  K+  F  +VK GRTH QDATP
Sbjct:   29 RAIENFPISGIA--FGRRFVRALGVVKKAAAQANRDLGLVDDERADAIVAAADEVIAGEHDDQFPVDVFQTGSGTSSNMNANEVIANRAAELLGEEIGDRVVHPNDHVNYGQSSNDVIPTAMHVASLDALVNDVKPGLETLAAELDDKADAFDGVVKTGRTHLQDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_STRAW (Fumarate hydratase class II OS=Streptomyces avermitilis GN=fumC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.647e-39
Identity = 90/168 (53.57%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            R+++NF I G+R  +    + A   +K  AAKVN E G LD  + +AI +AA EVAEG+ ++HFP+ V+QTGSGT SNMNANEVIA  A E LG       VHPNDHVN SQSSND FP+ +HIAA       L+P L+ L  +L  KS EF D+VK GRTH  DATP
Sbjct:   34 RAVENFPISGQR--LERAHIEALARIKGAAAKVNAELGVLDKDVAEAIQEAAAEVAEGRWDEHFPVDVFQTGSGTSSNMNANEVIATLATERLGRD-----VHPNDHVNASQSSNDVFPSSIHIAATAAVTRDLVPALEHLAAALGRKSEEFADVVKAGRTHLMDATP 194          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.221e-39
Identity = 89/169 (52.66%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS + F  G  +E MP  I+ A   +KKCAAK N + G LD      I+ A  E+  G+ ++HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA       LIP L+ L   + +K++EF   +KIGRTH  DA P
Sbjct:   25 RSQEFFSYG--KESMPLEIIHALVKIKKCAAKANGDLGCLDAKRRDMIVAATDEILSGEFDEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGELGSKHPVHPNDHVNKSQSSNDVFPTAMHIAAVQSIKGSLIPALEHLKKVIDAKALEFARDIKIGRTHLMDAVP 191          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.810e-38
Identity = 89/169 (52.66%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS   F  G  +E MP  +++A   +KKCAAK N +   LD      I+ A+ E+  G L +HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA       LIP L+ L  +L +K++EF   +KIGRTH  DA P
Sbjct:   25 RSKNFFSYG--KELMPIEVIQALVKIKKCAAKANGDLQCLDAKRRDMIVAASDEILSGGLEEHFPLKVWQTGSGTQSNMNVNEVIANLAIKRHGGELGSKNPVHPNDHVNKSQSSNDVFPTAMHIAAVQSIKGSLIPALEHLQKNLDAKALEFSRDIKIGRTHLMDAVP 191          
The following BLAST results are available for this feature:
BLAST of DY304843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_STAAS1.134e-4051.79Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAN1.134e-4051.79Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAM1.134e-4051.79Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_BLOFL1.481e-4050.90Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_SYNPX4.308e-4050.59Fumarate hydratase class II OS=Synechococcus sp. (... [more]
FUMC_HAEDU9.597e-4055.62Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_HALSA2.138e-3951.79Fumarate hydratase class II OS=Halobacterium salin... [more]
FUMC_STRAW3.647e-3953.57Fumarate hydratase class II OS=Streptomyces avermi... [more]
FUMC_CHLTR6.221e-3952.66Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC_CHLMU1.810e-3852.66Fumarate hydratase class II OS=Chlamydia muridarum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304843 ID=DY304843; Name=DY304843; organism=Citrus clementina; type=EST; length=563bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGGAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTCAAGGATATTGTTAAAATTGGGCGCACTCACACTCAAGATGCGACCCC
CTTTGACTCTTGGGCAAGAATTTAGTGGCTATACCAACCCAAATTGAAAT
AAGGCCATTGACC
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