DY304846

Overview
NameDY304846
Unique NameDY304846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: HELY_MYCLE (Probable helicase helY OS=Mycobacterium leprae GN=helY PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.571e-27
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:  427 FILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEF--HDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERG 804
            F LD FQ+ A   ++    VLV A T AGKTVV E+A+ L+L    +  YTTP+KALSNQKY + +  +  + +GL+TGD ++N  +  ++MTTE+LRNMLY  S  ++ +  V+ DE+H++ D+ RG
Sbjct:   16 FSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMDEVHFIADRMRG 143

HSP 2 Score: 28.8758 bits (63), Expect = 1.571e-27
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2 
Query:  809 VWEKTAIPPPEHLHYVFLSATIPNAPQF 892
            VWE+  +  P+ +  V LSAT+ NA +F
Sbjct:  145 VWEEVILHLPDDVRMVSLSATVSNAEEF 172
[Close]
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: HELS_METB6 (Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8) GN=Mboo_2458 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 38/116 (32.76%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:  478 QSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTA----SCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGVCL 813
            +++LV+  T++GKT++AE A+   + N  + +Y  P+KAL+++KY EF  +   VGL TGD+     A      ++ T+E + ++L  G+  + ++  V+ DEIH +   +RG  L
Sbjct:   40 KNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTL 155
The following BLAST results are available for this feature:
BLAST of DY304846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HELY_MYCLE1.571e-2744.53Probable helicase helY OS=Mycobacterium leprae GN=... [more]
HELS_METB69.298e-1232.76Putative ski2-type helicase OS=Methanoregula boone... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304846 ID=DY304846; Name=DY304846; organism=Citrus clementina; type=EST; length=933bp
TTTTGAACATATTTTGATACTCAATTTGTATATTTAACAATCTAAATGTG
GGACTGAACTGAAATAATGGCGGATATAGATAGTTTATTTGATTGTTTTG
AAAAATCTGCAGATAACGAGGCCGCTGTACAATTTCCTATTGTTAAAACT
GAAGAAACCCGGCCGAATGAAGATAAAGTAACTGACGAGTCTTCCAAAAA
GCGCTCCCATGAAGAAGACGACACGGAACATGCAAAAAAGCCTAAACAAG
ACGACAGTCAAAACGATGATCTTCTCGAAGATTTGAACTTGGATTTACTG
GATTCGCGAATTGTCGTCCATACATTGGAGACTCATGAAGGTTGCACCCA
CGAAGTCGCAATACCTCCGTGCCACGAGTACGCGCCGCTGGTGCAGAGCT
CGCAGGAGCCTGCCAAACAGTATACCTTCATTCTGGATCCTTTCCAAAAG
GAGGCTATACTTTGTATAGATAATCTGCAGTCAGTACTGGTATCAGCTCA
CACTTCTGCCGGTAAAACTGTGGTCGCTGAGTATGCCATAGCTCTGTCTC
TGAAAAATAAACAGAGAGTGATTTACACTACGCCTATTAAGGCACTGTCC
AATCAGAAGTACAGGGAGTTTTCTGAGGAGTTCCATGATGTGGGGCTGAT
CACCGGAGATGTCACTATTAACCCAACAGCATCATGCCTTATCATGACAA
CTGAGATTCTCAGAAACATGTTATACAGAGGTTCAGAGGTTATGCGGGAA
GTTGGCTGGGTGATATTTGATGAGATACACTACCTGAGAGATAAAGAGAG
GGGTGTTTGTTTGGGAGAAAACCGCTATTCCTCCACCTGAACACCTCCAC
TACGTGTTCCTGTCGGCCACCATACCTAACGCGCCCCAATTTCCGGAAGG
GGGTGGGCCGGCCTACCCTCCCACCTTGGTCCC
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