DY304891

Overview
NameDY304891
Unique NameDY304891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY304891_ssr721 microsatellite DY304891_ssr721:721..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:14..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  170 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIK---EEEVSSTTEENPT---------------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 502
            LP   +DSE+M++YGL+++A     +   ++S  IK    EE+   T   P+               K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++            + MRGS A+LNFP
Sbjct:   28 LPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.634e-17
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  278 EEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDL 679
            ++EV    E  PT++K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+            + +RGS AI+NFP+E                   V   K++ +   + + N+ + + R+ +  E  V+ +++
Sbjct:  121 KQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE-------------------VANFKQEFNNEIRPLVNSSRKRVRETVNEEQLVINKEM 235          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.081e-16
Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  233 PEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE------RVQESLKDMKCNTEE 553
            P  T     +++  K E     +EE   ++K YRGVR+RPWGKFAAEIRD  + G RVWLGTFD+            F +RGS AILNFP+E      R  E  K  K + +E
Sbjct:  127 PAKTEWIQFAAENTKPEVTKPVSEE---EKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRKRDDDE 236          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.024e-16
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  170 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPT-----KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 502
            LP + +DS++M +Y  + +A     + ++       EE     T+ + +     K   YRGVRRRPWGKFAAEIRD  ++G RVWLGT+++            F +RGS A LNFP
Sbjct:   34 LPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.024e-16
Identity = 41/69 (59.42%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  302 EENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 508
            E   T E  YRGVR+RPWGK+AAEIRDS RHG RVWLGTF++            F MRG  AILNFP E
Sbjct:    5 ESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.864e-16
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  320 EKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVER-VQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNK 622
            ++ YRGVRRRPWGK+AAEIRD  + G+RVWLGTFD+            F +RGS AILNFP+E    E L D K          ++LK K   R++ VT ++
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNK--------KTISLKAK---RKRQVTEDE 159          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.964e-16
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  290 SSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 508
            SS +     ++  YRGVRRRPWGK+AAEIRDS +HG RVWLGTFD+            +SMRG +AILNFP E
Sbjct:    7 SSGSGGGGAEQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHE 79          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.529e-15
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  329 YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 508
            YRGVRRRPWGK+AAEIRDS +HG RVWLGTFD+            +SMRG +AILNFP E
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.406e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  293 STTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 508
            ST  E   +E+ YRGVRRRPWGK+AAEIRD  + G R+WLGT+D+            F +RG  AILNFP++
Sbjct:   76 STKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLD 147          
BLAST of DY304891 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.449e-15
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  245 SEALVSSKRIKEEEVSSTTEENPTKE----KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 508
            +E+  SS      EV + +    TK     + YRGVRRRPWGKFAAEIRD  + G R+WLGTF+S            F +RG  A+LNFP++
Sbjct:   75 AESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLD 166          
The following BLAST results are available for this feature:
BLAST of DY304891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF2_TOBAC2.520e-1839.53Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF5_NICSY1.634e-1735.82Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH3.081e-1643.36Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF99_ARATH4.024e-1638.79Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF95_ARATH4.024e-1659.42Ethylene-responsive transcription factor ERF095 OS... [more]
EF105_ARATH6.864e-1646.08Ethylene-responsive transcription factor ERF105 OS... [more]
ERF97_ARATH8.964e-1656.16Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF96_ARATH1.529e-1565.00Ethylene-responsive transcription factor ERF096 OS... [more]
EF104_ARATH3.406e-1551.39Ethylene-responsive transcription factor ERF104 OS... [more]
EF107_ARATH4.449e-1544.57Ethylene-responsive transcription factor ERF107 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB10RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304891 ID=DY304891; Name=DY304891; organism=Citrus clementina; type=EST; length=995bp
GCGCAACACAACTAGGGAAAAAACAGAGTGAAAAACAGAGTCTCAGAACC
TGAACACACACTCTCATCAAATCCTAATGGATTCCTTGTTCTTCCACTCT
CCAAATTCAATTTCCTCATCGGAATCCTCTTTCGGGTCACCGGAGTCTTT
CCCTTTTTATAACAATTATCTTCCATTCAATGAAAATGACTCAGAAGAAA
TGCTTCTCTATGGACTAATAGCAGAAGCCACACCGGAAGCAACATCAGAA
GCACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGGTGAGTTCAACAAC
AGAGGAAAACCCCACCAAGGAAAAGTCATATAGAGGCGTTCGACGGCGGC
CGTGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACTAGGCATGGGATT
AGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAGCTGCTTTGGCTTA
CGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCTATACTCAATTTTC
CCGTTGAAAGGGTTCAAGAATCACTTAAAGACATGAAGTGTAACACCGAG
GAGGGATGCTCACCTGTGGTTGCACTAAAGAGGAAACATTCTATGAGAAG
AAAAATGGTGACTAATAATAAGAAGCATAAAGAGAGAGATAATTTGAGGA
TTGAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGATTACTTGGAAGAG
CTGCTAAGTTCATCTGAAAGTACTACTACTACTACAGCAAGACCTCGCTA
ATTGGTGAATTAGATAATAAGTCAACTACTTGTAACTTTCTGGCCTTATC
TTAATCTTCTTGCCCTTTTTTTTTTTTTTTAATTTAGTTATTGTCGTTAT
CTTCTTTTTCAATATGTAAACCAAAGACGGTTTATGCCTGTACAAGCTTT
CATTTTTTGAAAGCAAATTCGGGGTGATTCGTGTATCTAGTTTCTTTTAT
TTTAATACGAAGTTTAATCTAAATGAAAAAAATTGGCCATTTGTA
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