DY304892

Overview
NameDY304892
Unique NameDY304892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:18..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 5.587e-27
Identity = 86/257 (33.46%), Postives = 120/257 (46.69%), Query Frame = 1
Query:  106 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  FA   HET               +C+I EI+  S  YC   N  YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +               +P  N        G+G T   IN G+EC  G + AV  RI ++  +CG+ G+ P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSV--------------RPVLNQ-------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDP 262          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 8.068e-26
Identity = 83/249 (33.33%), Postives = 117/249 (46.99%), Query Frame = 1
Query:  106 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDA-VRNRIGFFSTFCGKFGIRP 846
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+     +     VI D   P+          G+G T  IINGG EC  G N A +  R+G++  +C + G+ P
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQEC-DGHNTAQMMARVGYYQEYCAQLGVSP 244          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.376e-25
Identity = 82/262 (31.30%), Postives = 113/262 (43.13%), Query Frame = 1
Query:  106 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCNLN---YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFFA   HET                C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM                     N+V    L G+G T   ING +EC      AV  R+ ++  +C +FG+ P
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDP 282          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.830e-25
Identity = 69/212 (32.55%), Postives = 100/212 (47.17%), Query Frame = 1
Query:  229 CPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRP 846
            C  + FYT  +F+ AA+++  F N        REIAAFFA   HET                C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM       + H+V++                G+G T   ING +EC      AV  R+ ++  +C +FG+ P
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSP 279          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.860e-22
Identity = 75/252 (29.76%), Postives = 109/252 (43.25%), Query Frame = 1
Query:  106 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGI 840
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA FA   HET               +C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ +++ +C + G+
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGV 262          
BLAST of DY304892 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.077e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  631 MTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIEC 768
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_BRANA5.587e-2733.46Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA8.068e-2633.33Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ1.376e-2531.30Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ6.830e-2532.55Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU1.860e-2229.76Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY5.077e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB11RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304892 ID=DY304892; Name=DY304892; organism=Citrus clementina; type=EST; length=1067bp
GGGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGCGTC
CTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCAC
GGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTAC
TGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAAT
TCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGC
TAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTA
CTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAA
GCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATG
ACGTANACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATC
AACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCG
TATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCGCCCTGTTA
CAATCTTGATTGCTACCACAACAGCCTTTTGGGCTTATTCTGATGGCACG
ATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAA
GCTACTTAATAAAAACTTTAGATGTCACACTTTGTAGTTGGGACAATAAG
TGGTTACGCTTCTTATGTAAATAAATTAAATAAAACTGATCCCAACTGGA
ATTAATGGATTCTTCTC
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