DY304893

Overview
NameDY304893
Unique NameDY304893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY304893_ssr138 microsatellite DY304893_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 5.388e-11
Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = -3 
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG G+NPARSF  A++      + + W++WVGP IG  + +  + ++L
Sbjct:  179 TGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223

HSP 2 Score: 42.743 bits (99), Expect = 5.388e-11
Identity = 28/103 (27.18%), Postives = 43/103 (41.75%), Query Frame = -1 
Query:  673 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 981
            LV     I G H+ PA     ++G ++SL+    YM AQ  GA+ G   + +       R     N L    + G     EI  T   V  +F+  D +R+ +
Sbjct:   55 LVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQ 156
[Close]
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 5.401e-11
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = -3 
Query:  452 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAA-FYHQYI 598
            P+T T +NPARS G A+    + A  + W+FW+ P +GA +A  FYH ++
Sbjct:  180 PVTNTSVNPARSTGPALFVG-DWAIAELWLFWLAPIVGAALAGLFYHAFL 228

HSP 2 Score: 41.9726 bits (97), Expect = 5.401e-11
Identity = 33/116 (28.45%), Postives = 51/116 (43.97%), Query Frame = -1 
Query:  655 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCG--FVKAFQKSYYNRYGGGAN-----ELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 981
            + +    I G HI PA  I     ++    ELL Y+ AQ  G I G G  ++ A  K+ ++  GG A+         GY     L  E++ TF+ +  +  +TD  R A     P+
Sbjct:   52 MAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD--RRAPKGFAPI 165
The following BLAST results are available for this feature:
BLAST of DY304893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MIP_HUMAN5.388e-1137.50Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQPZ_GLOVI5.401e-1142.00Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB12RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304893 ID=DY304893; Name=DY304893; organism=Citrus clementina; type=EST; length=1269bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGG
ATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTG
CCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCA
GAGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAG
TCCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCAT
ACCTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAG
ATTGCACCCNAGCACTGTGCTACCATGTACAAAAGAAGCTCGATGAGCGA
CACCTTGCGCCCCAGAACAGTCCGAATGTCACAAGCGGGGGTGATATGTC
CACCAAAAATACCGGCTGTGCAGTAAACGAGAAATGGAGATCCTGGCACC
CAAAGGCCCAAAGCAATGCCCAAAAATGCCAACGCCCCCCACCGGATTTG
GGTATTTAAAATTTGGGTTCCGGTCTGGGCCCTTTTTATTCCCATCCCCG
AAACACAAAGGGGTGAACAAAAAAAAAAAAAAAAAACGCTAGACAGAATA
AAACACCCCCATATTACCCTCCTTCTTTTAAAAAAAAACCCCCCCCTTCG
CCCCCTCCCCTCCCCCCATAAATACTTTTTATCCACGCCCGCCCCCGCGC
CGGAGGGAGGGGGGGGGGG
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