DY304893

Overview
NameDY304893
Unique NameDY304893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY304893_ssr138 microsatellite DY304893_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.337e-21
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  679 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 981
            +V C   I GGHI PA  +  V  RK+S+ + + Y+ AQC GAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR+
Sbjct:   84 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 56.225 bits (134), Expect = 2.337e-21
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  208 TGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.040e-21
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  679 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 981
            +V C   I GGHI PA  +  V  RK+S+ + + Y+ AQC GAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR+
Sbjct:   84 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 56.225 bits (134), Expect = 3.040e-21
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  208 TGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 3.954e-21
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  679 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 981
            +V C   I GGHI PA  +  V  R++S+ + + Y+ AQC GAI G G +  +  +  +  GG G   +    + G GL  E+I TF LV+T+F++ D KR+
Sbjct:   84 MVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 56.225 bits (134), Expect = 3.954e-21
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  208 TGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.144e-21
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  679 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 981
            +V C   I GGHI PA  +  V  RK+S+ + + Y++AQC GAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR+
Sbjct:   84 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 53.9138 bits (128), Expect = 5.144e-21
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPARSFG AVI      W + WI+WVGP +GA +A   ++Y+
Sbjct:  208 TGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.163e-20
Identity = 37/125 (29.60%), Postives = 61/125 (48.80%), Query Frame = -1
Query:  598 IFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVL----APLPHWVCCVHGSLGHHP 960
            + G H+ PA  +  +L  ++S+++ ++Y++AQC GA+     +        N    G N L+ G + G GLG EI+ TF LV  V + TD +R      VP+       L H +   +   G +P
Sbjct:   74 VSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENN-SLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNP 197          

HSP 2 Score: 53.9138 bits (128), Expect = 7.163e-20
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG G+NPARSFG+AV+    K +   WIFWVGP IG   AA  + +IL
Sbjct:  191 TGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 9.923e-19
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = -1
Query:  643 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPL 978
            V     + GGH+ PA     ++G ++S+I  + Y VAQ  GAI  C  ++       N        +A G ++  GL  EII TF LVY V+S A DPKR +    + ++APL
Sbjct:   81 VSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLAT----NGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPL 185          

HSP 2 Score: 54.6842 bits (130), Expect = 9.923e-19
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = -3
Query:  449 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 598
            P  G  +NPAR+FG A++  +   W + WI+WVGPFIG  +AA  ++Y++
Sbjct:  200 PFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.679e-18
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = -1
Query:  676 IFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 960
            + GGHI PA  +  ++G ++SL+  + Y+VAQ  GAI G G +        N  G    N L +    G  +  E+I TF L   +FS+TD +R++
Sbjct:   63 VSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG--NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS 156          

HSP 2 Score: 55.0694 bits (131), Expect = 1.679e-18
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARSFG AV+ N+       W+FWVGP +GA VAA  + Y+L
Sbjct:  180 TGCSMNPARSFGPAVVMNRFSP--SHWVFWVGPIVGAAVAAILYFYLL 225          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.691e-18
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = -1
Query:  676 IFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 960
            + GGHI PA  +  ++G ++SL+  + Y+ AQ  GAI G G +  +  +  N  G    N L++    G  +  E+I TF L   +FS+TD +R++
Sbjct:   63 VSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL--YWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS 156          

HSP 2 Score: 54.299 bits (129), Expect = 3.691e-18
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARSFG AV+ N+       W+FWVGP +GA +AA  + Y+L
Sbjct:  180 TGCSMNPARSFGPAVVMNRFSP--SHWVFWVGPIVGAVLAAILYFYLL 225          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.691e-18
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = -1
Query:  676 IFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 960
            + GGHI PA  +  ++G ++SL+  + Y+ AQ  GAI G G +  +  +  N  G    N L +    G  +  E+I TF L   +FS+TD +R++
Sbjct:   63 VSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL--YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS 156          

HSP 2 Score: 54.6842 bits (130), Expect = 3.691e-18
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARSFG AV+ N+       W+FWVGP +GA +AA  + Y+L
Sbjct:  180 TGCSMNPARSFGPAVVMNRFSP--SHWVFWVGPIVGAMLAAILYFYLL 225          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.797e-18
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = -3
Query:  449 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 598
            P +G  +NPAR+FG A++  +   W D WI+WVGPFIG+ +AA  ++Y++
Sbjct:  200 PFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          

HSP 2 Score: 55.4546 bits (132), Expect = 4.797e-18
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = -1
Query:  643 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPL 978
            V     + GGH+ PA     ++G +V+ I  + Y +AQ  GAI  C  ++       N        LA G     GL  EII TF LVY V+S   DPKR +    + ++APL
Sbjct:   81 VSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTT----NGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPL 185          
The following BLAST results are available for this feature:
BLAST of DY304893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AQP4_DIPME2.337e-2138.24Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_HUMAN3.040e-2138.24Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN3.954e-2137.25Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP4_MOUSE5.144e-2138.24Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQPA_RANES7.163e-2029.60Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
TIP32_ARATH9.923e-1935.40Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
AQP5_PIG1.679e-1834.38Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP5_MOUSE3.691e-1833.33Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_RAT3.691e-1833.33Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
TIP31_ARATH4.797e-1846.00Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB12RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304893 ID=DY304893; Name=DY304893; organism=Citrus clementina; type=EST; length=1269bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGG
ATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTG
CCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCA
GAGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAG
TCCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCAT
ACCTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAG
ATTGCACCCNAGCACTGTGCTACCATGTACAAAAGAAGCTCGATGAGCGA
CACCTTGCGCCCCAGAACAGTCCGAATGTCACAAGCGGGGGTGATATGTC
CACCAAAAATACCGGCTGTGCAGTAAACGAGAAATGGAGATCCTGGCACC
CAAAGGCCCAAAGCAATGCCCAAAAATGCCAACGCCCCCCACCGGATTTG
GGTATTTAAAATTTGGGTTCCGGTCTGGGCCCTTTTTATTCCCATCCCCG
AAACACAAAGGGGTGAACAAAAAAAAAAAAAAAAAACGCTAGACAGAATA
AAACACCCCCATATTACCCTCCTTCTTTTAAAAAAAAACCCCCCCCTTCG
CCCCCTCCCCTCCCCCCATAAATACTTTTTATCCACGCCCGCCCCCGCGC
CGGAGGGAGGGGGGGGGGG
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