DY304893

Overview
NameDY304893
Unique NameDY304893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY304893_ssr138 microsatellite DY304893_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.007e-15
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = -1
Query:  643 AGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 966
            A I GGH+ PA      +G  ++L+  ++Y++AQ  G+I     +     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+
Sbjct:   77 ANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPI 176          

HSP 2 Score: 45.8246 bits (107), Expect = 2.007e-15
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:  193 TGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.602e-15
Identity = 21/50 (42.00%), Postives = 33/50 (66.00%), Query Frame = -3
Query:  449 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 598
            P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y+L
Sbjct:  201 PFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLL 247          

HSP 2 Score: 50.447 bits (119), Expect = 2.602e-15
Identity = 37/122 (30.33%), Postives = 53/122 (43.44%), Query Frame = -1
Query:  643 GSPFLVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGAN----ELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 993
            G    V     + GGH+ PA     ++G +VSL+  +LY  AQ  GA+     ++           GGA      LA G   G  +  E + TF  VY  + +  DPKR     H+  +APL
Sbjct:   77 GLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLAT--------GGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPL 186          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.392e-15
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARS   A++  K   +DD W+FW+GP +GA VA+  + Y+L
Sbjct:  179 TGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          

HSP 2 Score: 46.9802 bits (110), Expect = 4.392e-15
Identity = 29/106 (27.36%), Postives = 45/106 (42.45%), Query Frame = -1
Query:  664 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSH 981
            LV     + G HI PA  +  ++G  VS +  + Y+ AQ  GA+ G   +         R     N L +    G  +  E+  T  LV  +F +TD +R  +  H
Sbjct:   55 LVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH 159          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.724e-15
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = -1
Query:  643 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 978
            V   A + GGH+ PA  +   +G  ++++  L Y +AQC G+   C  +K       N      + +A G +   G+  EII TF LVYTV+ +A DPK+ +    + V+AP+
Sbjct:   71 VSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVT----NGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPI 175          

HSP 2 Score: 44.2838 bits (103), Expect = 5.724e-15
Identity = 20/46 (43.48%), Postives = 26/46 (56.52%), Query Frame = -3
Query:  461 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 598
            P +G  +NPARSFG AV       +   WI+W GP IG  +A F +
Sbjct:  190 PFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIY 232          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 7.417e-15
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARS   A++  K   +DD W+FW+GP +GA VA+  + Y+L
Sbjct:  179 TGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          

HSP 2 Score: 46.2098 bits (108), Expect = 7.417e-15
Identity = 28/100 (28.00%), Postives = 44/100 (44.00%), Query Frame = -1
Query:  682 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 981
            LV     + G HI PA  +  ++G  VS +  + Y+ AQ  GA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD +R
Sbjct:   55 LVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERR 153          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 7.426e-15
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = -3
Query:  425 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKAL 598
            P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A  A+
Sbjct:  196 PFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAV 250          

HSP 2 Score: 49.2914 bits (116), Expect = 7.426e-15
Identity = 38/113 (33.63%), Postives = 53/113 (46.90%), Query Frame = -1
Query:  643 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPL 978
            V     I GGH+ PA     ++G +VSL+  +LY VAQ  GA+     ++        R  G A  LA G      +  E + TF L+Y  ++   DPKR     HV  +APL
Sbjct:   77 VAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGM--RPPGFA--LASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPL 181          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.252e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L
Sbjct:  179 TGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAILGSLLYNYVL 223          

HSP 2 Score: 47.7506 bits (112), Expect = 1.252e-14
Identity = 29/100 (29.00%), Postives = 46/100 (46.00%), Query Frame = -1
Query:  682 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 981
            LV     I G HI PA  +  ++G  VS++    Y+ AQ  GA+ G   +     +   R     N L++    G  +  E+  T  LV  +F++TD +R
Sbjct:   55 LVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADI-RGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERR 153          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.256e-14
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = -1
Query:  655 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 978
            V   A I GGH+ PA  +   +G  ++++    Y +AQ  G+   C  +K       N      + +A G N   G+  EII TF LVYTV+ +A DPK+ +  +  P+
Sbjct:   71 VSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVT----NGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPI 175          

HSP 2 Score: 45.4394 bits (106), Expect = 1.256e-14
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = -3
Query:  461 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 598
            P +G  +NPARSFG AV+      +   WI+W GP IG  +A F +
Sbjct:  190 PFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.631e-14
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  655 AGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG----LGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 966
            A I GGH+ PA     +LG  ++L+  +LY +AQ  G++  C F+ +F         GG    A G + G G    L  EI+ TF LVYTV+ +A DPK  +  +  P+
Sbjct:   78 ANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAAC-FLLSFAT-------GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPI 178          

HSP 2 Score: 42.743 bits (99), Expect = 1.631e-14
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            +G  +NPA +FG AV+      W + W++W GP IG  +A   + ++
Sbjct:  195 SGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLIGGGLAGIIYDFV 238          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.632e-14
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = -1
Query:  655 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 978
            V   A I GGH+ PA  +   +G  ++++    Y +AQ  G+   C  +K       N      + +A G N   G+  EII TF LVYTV+ +A DPK+ +  +  P+
Sbjct:   71 VSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVT----NGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPI 175          

HSP 2 Score: 45.4394 bits (106), Expect = 1.632e-14
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = -3
Query:  461 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 598
            P +G  +NPARSFG AV+      +   WI+W GP IG  +A F +
Sbjct:  190 PFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
The following BLAST results are available for this feature:
BLAST of DY304893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
TIP1_MEDTR2.007e-1532.11Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP32_MAIZE2.602e-1542.00Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
AQP2_SHEEP4.392e-1545.83Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
TIP_ANTMA5.724e-1532.74Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
AQP2_BOVIN7.417e-1545.83Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
TIP31_MAIZE7.426e-1537.93Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_HUMAN1.252e-1443.75Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP2_TOBAC1.256e-1432.11Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP12_ARATH1.631e-1435.78Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_TOBAC1.632e-1432.11Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB12RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304893 ID=DY304893; Name=DY304893; organism=Citrus clementina; type=EST; length=1269bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGG
ATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTG
CCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCA
GAGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAG
TCCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCAT
ACCTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAG
ATTGCACCCNAGCACTGTGCTACCATGTACAAAAGAAGCTCGATGAGCGA
CACCTTGCGCCCCAGAACAGTCCGAATGTCACAAGCGGGGGTGATATGTC
CACCAAAAATACCGGCTGTGCAGTAAACGAGAAATGGAGATCCTGGCACC
CAAAGGCCCAAAGCAATGCCCAAAAATGCCAACGCCCCCCACCGGATTTG
GGTATTTAAAATTTGGGTTCCGGTCTGGGCCCTTTTTATTCCCATCCCCG
AAACACAAAGGGGTGAACAAAAAAAAAAAAAAAAAACGCTAGACAGAATA
AAACACCCCCATATTACCCTCCTTCTTTTAAAAAAAAACCCCCCCCTTCG
CCCCCTCCCCTCCCCCCATAAATACTTTTTATCCACGCCCGCCCCCGCGC
CGGAGGGAGGGGGGGGGGG
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