DY304893

Overview
NameDY304893
Unique NameDY304893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY304893_ssr138 microsatellite DY304893_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.747e-14
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = -3
Query:  437 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 592
            TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L  +A
Sbjct:  179 TGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLLFPSA 227          

HSP 2 Score: 45.8246 bits (107), Expect = 2.747e-14
Identity = 29/104 (27.88%), Postives = 44/104 (42.31%), Query Frame = -1
Query:  682 GSPFLVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 993
            G   LV     + G HI PA  +  ++G  VS +    Y+ AQ  GA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD +R
Sbjct:   51 GIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERR 153          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 2.747e-14
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  449 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 592
            TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L
Sbjct:  179 TGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          

HSP 2 Score: 46.595 bits (109), Expect = 2.747e-14
Identity = 29/101 (28.71%), Postives = 44/101 (43.56%), Query Frame = -1
Query:  679 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 981
            LV     + G HI PA  +  ++G  VS +    Y+ AQ  GA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD +RS
Sbjct:   55 LVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRS 154          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.755e-14
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  655 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 978
            V   A I GGH+ PA  +   +G  +++I    Y +AQC G+I  C  +  F     N      + +A G     G+  EI+ TF LVYTV+ +A DPK+ +  +  P+
Sbjct:   71 VSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVAC-LLLVF---VTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPI 175          

HSP 2 Score: 43.5134 bits (101), Expect = 2.755e-14
Identity = 19/46 (41.30%), Postives = 27/46 (58.70%), Query Frame = -3
Query:  461 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 598
            P +G  +NPARSFG AV+      +   WI+WVGP +G  +A   +
Sbjct:  190 PFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.580e-14
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  655 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 978
            V   A I GGH+ PA  +   +G  ++LI    Y +AQC G+I  C  +  F     N      + ++ G     G+  EI+ TF LVYTV+ +A DPK+ +  +  P+
Sbjct:   71 VSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC-LLLVF---VTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPI 175          

HSP 2 Score: 42.3578 bits (98), Expect = 3.580e-14
Identity = 19/46 (41.30%), Postives = 26/46 (56.52%), Query Frame = -3
Query:  461 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 598
            P +G  +NPARSFG AV+          WI+WVGP +G  +A   +
Sbjct:  190 PFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVGGALAGLIY 232          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.580e-14
Identity = 35/105 (33.33%), Postives = 52/105 (49.52%), Query Frame = -1
Query:  655 AGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 966
            A I GGH+ PA      LG +++++  + Y +AQ  GAI G   V+         +G        G     G+  EII TF LVYTV+ +A DPK+ +  +  P+
Sbjct:   76 ANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPI 174          

HSP 2 Score: 46.2098 bits (108), Expect = 3.580e-14
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = -3
Query:  452 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 598
            P +G  +NPARSFG AV       + + WI+WVGP +G  +A   ++Y+
Sbjct:  189 PFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 6.030e-14
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = -3
Query:  437 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 598
            P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A
Sbjct:  197 PFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLVIPSA 247          

HSP 2 Score: 46.2098 bits (108), Expect = 6.030e-14
Identity = 38/113 (33.63%), Postives = 51/113 (45.13%), Query Frame = -1
Query:  643 VYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPL 978
            V     I GGH+ PA     +LG ++SLI  L Y +AQ  GA+     ++        R  G A  LA G      +  E   TF L+Y  ++   DPKR     HV  +APL
Sbjct:   78 VAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGM--RPPGFA--LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPL 182          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 7.851e-14
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = -1
Query:  643 AGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 966
            A I GGH+ PA      +G  ++L+  ++Y++AQ  G+I     +     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+
Sbjct:   77 ANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPI 175          

HSP 2 Score: 45.8246 bits (107), Expect = 7.851e-14
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = -3
Query:  452 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 592
            TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:  192 TGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.324e-13
Identity = 33/107 (30.84%), Postives = 53/107 (49.53%), Query Frame = -1
Query:  643 IFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 960
            + GGH+ PA     ++G ++S+I  + Y +AQ  G+I     ++       N        ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL
Sbjct:   79 VSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVT----NNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPL 177          

HSP 2 Score: 46.9802 bits (110), Expect = 1.324e-13
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = -3
Query:  455 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 598
            P  G  +NPA +FG +++  +   W   WIFWVGP +GA +AA  ++Y
Sbjct:  192 PFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEY 236          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 1.718e-13
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -3
Query:  449 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 598
            P TG G+NPARSF  AVI    + + + W+FW GP +GA +AA  ++  L
Sbjct:  177 PFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          

HSP 2 Score: 45.4394 bits (106), Expect = 1.718e-13
Identity = 34/114 (29.82%), Postives = 51/114 (44.74%), Query Frame = -1
Query:  640 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 981
            LV     + GGHI PA  +  +L  ++SL   L Y++AQ  GA+ G G +     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP
Sbjct:   55 LVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAV-RGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALP 163          
BLAST of DY304893 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 2.818e-13
Identity = 17/46 (36.96%), Postives = 27/46 (58.70%), Query Frame = -3
Query:  443 INPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 580
            +NPARS G + + NK   WD  W++W GP +G   +   ++YI  +
Sbjct:  237 LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYIFNS 279          

HSP 2 Score: 47.7506 bits (112), Expect = 2.818e-13
Identity = 30/100 (30.00%), Postives = 41/100 (41.00%), Query Frame = -1
Query:  682 LVYCTAGIFGGHITPACDIRTVLGRKVSLIELLLYMVAQCXGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 981
            L  C   I G HI PA  +   + R +S I   +Y+ AQC G I G   +       Y      A   +         G E I TF++V   F +TDP +
Sbjct:  113 LTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMK 212          
The following BLAST results are available for this feature:
BLAST of DY304893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AQP2_RAT2.747e-1442.31Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP2_MOUSE2.747e-1443.75Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP22_ARATH2.755e-1433.03Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_ARATH3.580e-1433.03Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_ORYSJ3.580e-1433.33Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP31_ORYSJ6.030e-1438.89Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDSA7.851e-1432.11Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIPA_PHAVU1.324e-1330.84Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
MIP_CHICK1.718e-1346.00Lens fiber major intrinsic protein OS=Gallus gallu... [more]
BIB_DROME2.818e-1336.96Neurogenic protein big brain OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB12RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304893 ID=DY304893; Name=DY304893; organism=Citrus clementina; type=EST; length=1269bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGG
ATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTG
CCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCA
GAGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAG
TCCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCAT
ACCTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAG
ATTGCACCCNAGCACTGTGCTACCATGTACAAAAGAAGCTCGATGAGCGA
CACCTTGCGCCCCAGAACAGTCCGAATGTCACAAGCGGGGGTGATATGTC
CACCAAAAATACCGGCTGTGCAGTAAACGAGAAATGGAGATCCTGGCACC
CAAAGGCCCAAAGCAATGCCCAAAAATGCCAACGCCCCCCACCGGATTTG
GGTATTTAAAATTTGGGTTCCGGTCTGGGCCCTTTTTATTCCCATCCCCG
AAACACAAAGGGGTGAACAAAAAAAAAAAAAAAAAACGCTAGACAGAATA
AAACACCCCCATATTACCCTCCTTCTTTTAAAAAAAAACCCCCCCCTTCG
CCCCCTCCCCTCCCCCCATAAATACTTTTTATCCACGCCCGCCCCCGCGC
CGGAGGGAGGGGGGGGGGG
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