DY305003

Overview
NameDY305003
Unique NameDY305003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1239
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305003 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.777e-75
Identity = 138/181 (76.24%), Postives = 156/181 (86.19%), Query Frame = 1
Query:  331 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLRQIGLTFHLL*DVPGLISRK*RKACLK 873
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLR+ GLTFHLL DVPG++S+   KA ++
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVE 181          
BLAST of DY305003 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.321e-75
Identity = 141/209 (67.46%), Postives = 166/209 (79.43%), Query Frame = 1
Query:  247 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLRQIGLTFHLL*DVPGLISRK*RKACLK 873
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LR++GLTF+L   VP +IS+    A  K
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSK 209          
BLAST of DY305003 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 6.557e-62
Identity = 118/162 (72.84%), Postives = 136/162 (83.95%), Query Frame = 1
Query:  388 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLRQIGLTFHLL*DVPGLISRK*RKACLK 873
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLR+ GLTFHLL DVPG++S+   KA ++
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVE 161          
BLAST of DY305003 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.201e-47
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  490 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLRQIGLTFHLL*DVPGLISRK*RKA 864
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLR++GLTFHLL DVPGLIS+   K+
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKS 125          
BLAST of DY305003 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.079e-22
Identity = 73/268 (27.24%), Postives = 130/268 (48.51%), Query Frame = 1
Query:   40 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLRQIGLTFHLL*DVPGLI 843
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVI 3038          
The following BLAST results are available for this feature:
BLAST of DY305003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS6_MEDSA1.777e-7576.24Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
THS2_ARAHY2.321e-7567.46Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS7_MEDSA6.557e-6272.84Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO1.201e-4776.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI5.079e-2227.24Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC09RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305003 ID=DY305003; Name=DY305003; organism=Citrus clementina; type=EST; length=1239bp
GTAAGGGTTCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCA
GCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTG
CCCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACA
AAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGA
CAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGA
AGGAAAACCCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGT
CAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTAC
AAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCA
TCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTC
ACCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCA
ACAAGGATGTTTCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGG
CTGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACG
GCGGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGG
CCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATC
CTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAG
ACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCCAAAT
CGGTCTCACTTTCCATTTGCTTTAAGACGTCCCCGGCTTGATCTCAAGAA
AATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTGGCAATCACCACTG
GAACTCGATATTCCTGGATCCTCACCCCCGGTGGGCCCGCAATTCTGGAC
CAAATGAAGTTCCAACTGGGCCTCCAAGGGGGAAAACCTGAAAGGCCACA
CGTCAAGTTTTGAGGTGAATACGGCAACCAGTTCAAACCCCCTTGTTTTC
TGGCTCTTCCCCTTCCGAAAAGAAAAAAAGAAAAATCTGTTTGAGAAAAA
GCAAAAACAAACCCCCCCCGCCAAAGAGGCCCTGGTTTTTGGGGGTGGTT
TTGTTTTTTCGGTGTTTTCCCGGGCCCCCGGGGGCCCCCCCCCCCCCTTC
TCCACACACCCCACCACTATTCTTTTTCCCTCGCCCCCC
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