DY305117

Overview
NameDY305117
Unique NameDY305117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305117 vs. ExPASy Swiss-Prot
Match: AKD1A_HUMAN (Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.904e-11
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  505 VHAAARGGNLKILKELLENCTDV-LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRKLDRQVKLMKQLASGQISNMETSSMA 927
            +H AA+ G++ +L  ++E+  DV L + DK G T  H AA  GQ++ +  L+ S    N  D +GNT LH+AA RG  AV++ L+      +  +N  G T LHSA  G      + L R    +  L    +S +  ++++
Sbjct:  128 LHCAAQKGHVPVLAFIMEDLEDVALDHVDKLGRTAFHRAAEHGQLDALDFLVGSGCDHNVKDKEGNTALHLAAGRGHMAVLQRLVDIGLD-LEEQNAEGLTALHSAAGGSHPDCVQLLLRAGSTVNALTQKNLSCLHYAALS 268
The following BLAST results are available for this feature:
BLAST of DY305117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AKD1A_HUMAN6.904e-1132.39Ankyrin repeat and death domain-containing protein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CA04RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305117 ID=DY305117; Name=DY305117; organism=Citrus clementina; type=EST; length=1244bp
TGCCGAATTCGGCACGAGGGCCACTATGATTTAGTGAGGGAGCTTCTTCG
CATTGACGGCAATCATCTCATCAAGCTGACTTCTCTCAGGCGAATTCGCC
GCCTTGAGACTGTTTGGGATGATGAAGAACAGTTTGATGATGTTGCCAAA
TGCAGATCCAAGGTTGCTAGGAAACTGTTTCTTGAGTGTAAATCCAAGAA
TGGGAAGAATTCTCTCATAAGAGCTGGGTATGGTGGGTGGCTATTATACA
CTGCCGCATCAGCTGGAGACTTGGGTTTTGTTAAACAGCTTCTTGACAAG
AACCCACTTCTTGTTTTTGGAGAAGGAGAGTATGGGGTTACTGATATCTT
TTATGCTGCAGCCAGGAGCAAAAACTGTGATGTTTTCAGGCTTATTTATG
ATTTCGCCGTGTCGCCGAGGTTTTTGACAGCCAAGGGTGGAGAGTTGGAG
GAGCACATTGAGGAAATTCCTTCTGTTTACAAGTGGGAGATGATGAATAG
AGCTGTCCATGCTGCTGCCAGGGGAGGAAACCTGAAGATCTTGAAGGAGC
TTTTGGAGAATTGCACTGATGTCCTGACTTATAGAGATAAGCAGGGGTCA
ACTATCTTGCATGCAGCTGCTGGTAGAGGCCAGGTTGAGGTAGTGAAAGA
TCTTATAGCATCCTTTGATATCATCAACTCCACAGACCATCAAGGGAACA
CACCATTACATATTGCAGCCTACAGGGGCCAACCAGCAGTGGTTGAAGCT
CTGATCCTTGCTTCTCCTTCAATGATCTCTGTAAAGAACACTTCTGGAGA
AACTTTTCTCCACTCAGCAGTTTCCGGTTTCCAGACTTATGCTTTTAGAA
AATTGGATCGACAGGTTAAGCTCATGAAGCAGCTAGCAAGTGGGCAGATT
TCCAACATGGAGACATCATCAATGGCCAGAATAATGATTGGAGAACTGCT
CTTCACATGGGCCATCACTGGGAAATGTTCATTTAAAACAAGAACAACTC
CTGAGGGCCGCCCCATTCCATTAAGGGGGAATGTTCGGGAAAATGGAGGG
CATGAACTACCCTTTGAATCCCCCTAAGCAAAAGGGCACAAATCCCGGCC
CTCCCCAAAAAAAATTTAAAATTAAAAATTTTTAAATTTCTGGGGTCGGG
GGGGGGGATTATTTGCGGGTGTGGTCAGGGGAATTTATTTTTTTGTGGCG
AAAAAAAAGGGGGCGCCCCTGTTTGTGCCCCCTTCTCCCATAAA
back to top